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Cells
Single cell atlas of the human retina - all cells - scRNA-seq
Homo sapiens
fovea centralis
peripheral region of retina
chorioretinal region
retinal neural layer
macula lutea proper
normal
10x 3' v2
10x 3' v3
Single cell atlas of the human retina
265,767
snRNA-seq of human retina - retinal ganglion cell subset
Homo sapiens
macula lutea
fovea centralis
peripheral region of retina
macula lutea proper
normal
10x 3' v3
Single cell atlas of the human retina
399,605
snRNA-seq of human retina - bipolar cell subset
Homo sapiens
peripheral region of retina
macula lutea
fovea centralis
macula lutea proper
normal
10x 3' v3
Single cell atlas of the human retina
691,008
snRNA-seq of human retina - amacrine cell subset
Homo sapiens
peripheral region of retina
macula lutea
fovea centralis
macula lutea proper
normal
10x 3' v3
Single cell atlas of the human retina
571,579
snRNA-seq of human retina - all cells
Homo sapiens
peripheral region of retina
macula lutea
fovea centralis
macula lutea proper
normal
10x 3' v3
Single cell atlas of the human retina
3,177,310
Single cell atlas of the human retina - Bipolar cell subclass - scRNA-seq
Homo sapiens
fovea centralis
peripheral region of retina
chorioretinal region
retinal neural layer
macula lutea proper
normal
10x 3' v2
10x 3' v3
Single cell atlas of the human retina
72,788
Single Cell Atlas of Human Ocular Surface scRNA-seq: Cornea, Limbus, Sclera
Homo sapiens
corneo-scleral junction
cornea
sclera
ocular surface region
tunica fibrosa of eyeball
substantia propria of cornea
corneal epithelium
corneal endothelium
normal
10x 3' v3
10x multiome
10x 3' v2
Single cell atlas of the human ocular surface
815,769
Single Cell Atlas of Human Ocular Surface snRNA-seq: Cornea, Limbus, Sclera
Homo sapiens
cornea
corneo-scleral junction
sclera
normal
10x 3' v3
Single cell atlas of the human ocular surface
147,484
Single cell atlas of the human trabecular meshwork and ciliary body - snRNA-seq
Homo sapiens
ciliary body
eye trabecular meshwork
uvea
normal
10x 3' v3
Single cell atlas of the human trabecular meshwork and ciliary body
1,102,250
Single cell atlas of the human trabecular meshwork and ciliary body - scRNA-seq
Homo sapiens
ciliary body
eye trabecular meshwork
normal
10x 3' v3
10x 3' v2
10x 5' v2
Single cell atlas of the human trabecular meshwork and ciliary body
332,995
scRNA-seq of human of the human retinal pigment epithelium and the choroid
Homo sapiens
chorioretinal region
optic choroid
eyeball of camera-type eye
pigmented layer of retina
normal
10x 3' v3
10x 5' v2
10x 3' v2
Single cell atlas of the human retinal pigment epithelium and the choroid
182,151
snRNA-seq of human of the human retinal pigment epithelium and the choroid
Homo sapiens
chorioretinal region
normal
10x 3' v3
10x 5' v2
Single cell atlas of the human retinal pigment epithelium and the choroid
851,993
AIDA Phase 1 Data Freeze v2: Chinese, Indian, Japanese, Korean, Malay, and Thai donors in Japan, Singapore, South Korea, Thailand, and India
Homo sapiens
blood
normal
10x 5' v2
Asian Immune Diversity Atlas (AIDA) v2
1,265,624
The Human Neural Organoid Atlas
Homo sapiens
telencephalon
cerebral cortex
brain
midbrain tegmentum
midbrain tectum
arcuate nucleus of hypothalamus
ventral part of telencephalon
hindbrain
choroid plexus
cerebellum
dorsal plus ventral thalamus
normal
10x 3' v3
10x 3' v2
Drop-seq
10x multiome
BD Rhapsody Whole Transcriptome Analysis
SPLiT-seq
Quartz-seq
Smart-seq2
An integrated transcriptomic cell atlas of human neural organoids
1,767,674
Single-nucleus RNA-seq of the Adult Human Kidney (Version 1.5)
Homo sapiens
cortex of kidney
renal medulla
renal papilla
kidney
chronic kidney disease
normal
acute kidney failure
10x 3' v3
An atlas of healthy and injured cell states and niches in the human kidney (Version 1.5)
304,989
Single-cell RNA-seq of the Adult Human Kidney (Version 1.5)
Homo sapiens
kidney
chronic kidney disease
acute kidney failure
normal
10x 3' v3
An atlas of healthy and injured cell states and niches in the human kidney (Version 1.5)
225,177
An Atlas of Cells in the Human Tonsil
Homo sapiens
palatine tonsil
tonsillitis
10x 3' v3
An Atlas of Cells in the Human Tonsil
377,963
Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
Homo sapiens
ileum
crohns_disease
functional_gastrointestinal_disorder
10x 3' v2
Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
197,281
human intestine organoid cell atlas
Homo sapiens
intestine
duodenum
ileum
colon
normal
10x 3' v3
10x 3' v2
10x 5' v2
SORT-seq
Seq-Well S3
Integrated human endoderm-derived organoids cell atlas (HEOCA)
353,140
human endoderm organoid cell atlas
Homo sapiens
intestine
alveolar sac
lung
pancreas
duodenum
liver
ileum
colon
salivary gland epithelium
intrahepatic bile duct
gallbladder
common bile duct
biliary system
corpus
prostate gland
stomach
bronchus
nasopharynx
thyroid gland
pyloric antrum
normal
10x 3' v3
10x 3' v2
10x 5' v1
10x multiome
SORT-seq
Seq-Well S3
CEL-seq2
Smart-seq
Integrated human endoderm-derived organoids cell atlas (HEOCA)
806,646
human lung organoid cell atlas
Homo sapiens
alveolar sac
lung
bronchus
nasopharynx
normal
10x 3' v3
10x 5' v1
10x 3' v2
Integrated human endoderm-derived organoids cell atlas (HEOCA)
221,425
Cross-species Spinal Cord Atlas: GABAergic
Macaca Mulatta
Mus musculus
Homo sapiens
Spinal cord
normal
10x multiome
Consensus Spinal Cord Atlas
48,313
Cross-species Spinal Cord Atlas: Glutamatergic
Mus musculus
Macaca Mulatta
Homo sapiens
Spinal cord
normal
10x multiome
Consensus Spinal Cord Atlas
57,219
Cross-species Spinal Cord Atlas
Mus musculus
Macaca Mulatta
Homo sapiens
Spinal cord
normal
10x multiome
Consensus Spinal Cord Atlas
230,825
Cross-species Spinal Cord Atlas: Non-Neurons
Mus musculus
Macaca Mulatta
Homo sapiens
Spinal cord
normal
10x multiome
Consensus Spinal Cord Atlas
122,011
Cross-species Spinal Cord Atlas: Cholinergic
Mus musculus
Macaca Mulatta
Homo sapiens
Spinal cord
normal
10x multiome
Consensus Spinal Cord Atlas
3,549
Skin fibroblast scRNA-seq atlas in health
Homo sapiens
zone of skin
normal
psoriasis
Lyme disease
palmar fibromatosis
atopic eczema
subacute cutaneous lupus erythematosus
discoid lupus erythematosus
squamous cell carcinoma
10x 3' v2
10x 3' v3
10x 5' v2
10x 5' v1
10x 3' v1
Pan-disease fibroblast atlas in skin fibrosis, inflammation, and cancer
153,546
Skin fibroblasts - Pan-disease fibroblast atlas in skin fibrosis, inflammation, and cancer
Homo sapiens
zone of skin
normal
psoriasis
palmar fibromatosis
systemic sclerosis
keloid
Lyme disease
prurigo nodularis
dermatitis, atopic
cutaneous sclerosis
alopecia areata
basal cell carcinoma
subacute cutaneous lupus erythematosus
sarcoidosis
acne
localized scleroderma
acral lentiginous melanoma
discoid lupus erythematosus
hidradenitis suppurativa
squamous cell carcinoma
drug rash with eosinophilia and systemic symptoms
granuloma annulare
cutaneous melanoma
10x 3' v2
10x 3' v3
10x 5' v2
10x 5' v1
10x 3' v1
Pan-disease fibroblast atlas in skin fibrosis, inflammation, and cancer
337,376
All cells from human liver dataset
Homo sapiens
liver
normal
10x 3' v3
10x 3' v2
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
167,598
CD45 negative cells from human liver dataset
Homo sapiens
liver
normal
10x 3' v3
10x 3' v2
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
15,481
