Combined single cell and single nuclei RNA-Seq data - Heart Global

Main

Cell Metadata

endothelial cell of lymphatic vessel

Ontology Term: endothelial cell of lymphatic vesselCL:0002138
SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.: lymphatic endothelial cell, LEC
CategoryClass of which the cell type is a subclass.: endothelial cell of vascular treeCL:0002139
Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.: LYVE1
Canonical Marker Genes: unknown
Rationale: NA

Set of Labels Description: Integrated previously published scRNA-seq and snRNA-seq datasets with newly generated multiome data (paired snRNA-seq and single nucleus assay for transposase-accessible chromatin using sequencing (snATAC-seq)).
Annotation Method: both
Algorithm Name: scNym
Algorithm Version: v0.3
Algorithm URL: https://github.com/calico/scnym
Annotation Transfer Reference: https://www.nature.com/articles/s41586-020-2797-4
Annotation Transfer Description: Litviňuková, M., Talavera-López, C., Maatz, H. et al. Cells of the adult human heart. Nature 588, 466–472 (2020). https://doi.org/10.1038/s41586-020-2797-4

Main

Cell Metadata

Ontology Term: endothelial cell of lymphatic vesselCL:0002138
SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.: lymphatic endothelial cell, LEC
CategoryClass of which the cell type is a subclass.: endothelial cell of vascular treeCL:0002139
Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.: LYVE1
Canonical Marker Genes: unknown
Rationale: NA

Set of Labels Description: Integrated previously published scRNA-seq and snRNA-seq datasets with newly generated multiome data (paired snRNA-seq and single nucleus assay for transposase-accessible chromatin using sequencing (snATAC-seq)).
Annotation Method: both
Algorithm Name: scNym
Algorithm Version: v0.3
Algorithm URL: https://github.com/calico/scnym
Annotation Transfer Reference: https://www.nature.com/articles/s41586-020-2797-4
Annotation Transfer Description: Litviňuková, M., Talavera-López, C., Maatz, H. et al. Cells of the adult human heart. Nature 588, 466–472 (2020). https://doi.org/10.1038/s41586-020-2797-4