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organism
Callithrix jacchus
Homo sapiens
Macaca Mulatta
Mus musculus
tissue
assay
Dataset
Organism
Tissue
Disease
Assay
Cells
Cross-species Spinal Cord Atlas: Cholinergic
Mus musculus
Macaca Mulatta
Homo sapiens
Spinal cord
normal
10x multiome
3,549
Cross-species Spinal Cord Atlas: Glutamatergic
Mus musculus
Macaca Mulatta
Homo sapiens
Spinal cord
normal
10x multiome
57,219
Cross-species Spinal Cord Atlas: GABAergic
Macaca Mulatta
Mus musculus
Homo sapiens
Spinal cord
normal
10x multiome
48,313
Cross-species Spinal Cord Atlas: Non-Neurons
Mus musculus
Macaca Mulatta
Homo sapiens
Spinal cord
normal
10x multiome
122,011
Cross-species Spinal Cord Atlas
Mus musculus
Macaca Mulatta
Homo sapiens
Spinal cord
normal
10x multiome
230,825
Single cell atlas of the human retina - Bipolar cell subclass - scRNA-seq
Homo sapiens
fovea centralis
peripheral region of retina
chorioretinal region
retinal neural layer
macula lutea proper
normal
10x 3' v2
10x 3' v3
72,788
Single cell atlas of the human retina - all cells - scRNA-seq
Homo sapiens
fovea centralis
peripheral region of retina
chorioretinal region
retinal neural layer
macula lutea proper
normal
10x 3' v2
10x 3' v3
265,767
snRNA-seq of human retina - retinal ganglion cell subset
Homo sapiens
macula lutea
fovea centralis
peripheral region of retina
macula lutea proper
normal
10x 3' v3
399,605
snRNA-seq of human retina - amacrine cell subset
Homo sapiens
peripheral region of retina
macula lutea
fovea centralis
macula lutea proper
normal
10x 3' v3
571,579
snRNA-seq of human retina - bipolar cell subset
Homo sapiens
peripheral region of retina
macula lutea
fovea centralis
macula lutea proper
normal
10x 3' v3
691,008
snRNA-seq of human retina - all cells
Homo sapiens
peripheral region of retina
macula lutea
fovea centralis
macula lutea proper
normal
10x 3' v3
3,177,310
CD45 negative cells from human liver dataset
Homo sapiens
liver
normal
10x 3' v3
10x 3' v2
15,481
Myeloid cells from human liver dataset
Homo sapiens
liver
normal
10x 3' v2
10x 3' v3
40,821
Lymphoid cells from human liver dataset
Homo sapiens
liver
normal
10x 3' v3
10x 3' v2
105,790
All cells from human liver dataset
Homo sapiens
liver
normal
10x 3' v3
10x 3' v2
167,598
human intestine organoid cell atlas
Homo sapiens
intestine
duodenum
ileum
colon
normal
10x 3' v3
10x 3' v2
10x 5' v2
SORT-seq
Seq-Well S3
353,140
human endoderm organoid cell atlas
Homo sapiens
intestine
alveolar sac
lung
pancreas
duodenum
liver
ileum
colon
salivary gland epithelium
intrahepatic bile duct
gallbladder
common bile duct
biliary system
corpus
prostate gland
stomach
bronchus
nasopharynx
thyroid gland
pyloric antrum
normal
10x 3' v3
10x 3' v2
10x 5' v1
10x multiome
SORT-seq
Seq-Well S3
CEL-seq2
Smart-seq
806,646
human lung organoid cell atlas
Homo sapiens
alveolar sac
lung
bronchus
nasopharynx
normal
10x 3' v3
10x 5' v1
10x 3' v2
221,425
snRNA-seq of human optic nerve and optic nerve head - endothelial cells
Homo sapiens
cranial nerve II
optic disc
normal
10x 3' v3
34,934
snRNA-seq of human optic nerve and optic nerve head - fibroblasts
Homo sapiens
cranial nerve II
optic disc
normal
10x 3' v3
118,925
snRNA-seq of human optic nerve and optic nerve head - oligodendrocytes
Homo sapiens
cranial nerve II
optic disc
normal
10x 3' v3
278,040
snRNA-seq of human optic nerve and optic nerve head - astrocytes
Homo sapiens
cranial nerve II
optic disc
normal
10x 3' v3
273,711
snRNA-seq of human optic nerve and optic nerve head - all cells
Homo sapiens
cranial nerve II
optic disc
normal
10x 3' v3
959,629
Skin fibroblast scRNA-seq atlas in health
Homo sapiens
zone of skin
normal
psoriasis
Lyme disease
palmar fibromatosis
atopic eczema
subacute cutaneous lupus erythematosus
discoid lupus erythematosus
squamous cell carcinoma
10x 3' v2
10x 3' v3
10x 5' v2
10x 5' v1
10x 3' v1
153,546
Skin fibroblasts - Pan-disease fibroblast atlas in skin fibrosis, inflammation, and cancer
Homo sapiens
zone of skin
normal
psoriasis
palmar fibromatosis
systemic sclerosis
keloid
Lyme disease
prurigo nodularis
dermatitis, atopic
cutaneous sclerosis
alopecia areata
basal cell carcinoma
subacute cutaneous lupus erythematosus
sarcoidosis
acne
localized scleroderma
acral lentiginous melanoma
discoid lupus erythematosus
hidradenitis suppurativa
squamous cell carcinoma
drug rash with eosinophilia and systemic symptoms
granuloma annulare
cutaneous melanoma
10x 3' v2
10x 3' v3
10x 5' v2
10x 5' v1
10x 3' v1
337,376
Human liver cell atlas - cholangiocyte cells
Homo sapiens
liver
caudate lobe of liver
left lobe of liver
right lobe of liver
normal
10x 3' v3
10x 3' v2
10x 5' v1
8,811
Human liver cell atlas - mesenchyme cells
Homo sapiens
left lobe of liver
liver
caudate lobe of liver
right lobe of liver
normal
10x 3' v3
10x 3' v2
10x 5' v1
31,278
Human liver cell atlas - endothelia cells
Homo sapiens
left lobe of liver
right lobe of liver
caudate lobe of liver
liver
normal
10x 3' v3
10x 3' v2
10x 5' v1
86,530
Human liver cell atlas - myeloid cells
Homo sapiens
liver
caudate lobe of liver
right lobe of liver
left lobe of liver
normal
10x 3' v3
10x 3' v2
10x 5' v1
65,575
Human liver cell atlas - lymphocyte cells
Homo sapiens
liver
caudate lobe of liver
right lobe of liver
left lobe of liver
normal
10x 3' v3
10x 3' v2
10x 5' v1
103,347
