Cell Annotation Platform
Home
Datasets
Cell Labels
Blog
Docs
Sign In / Join
Query
organism
Callithrix jacchus
Homo sapiens
Macaca mulatta
Mus musculus
tissue
assay
Dataset
Organism
Tissue
Assay
Cells
Feedback
Whole Mouse Brain Taxonomy, Medulla neurons
Mus musculus
medulla oblongata
cerebellum
pons
midbrain
hypothalamus
dorsal plus ventral thalamus
neocortex
cerebral cortex
olfactory cortex
10x 3' v2
10x 3' v3
60,075
0
Whole Mouse Brain Taxonomy, 03 OB-CR Glut
Mus musculus
olfactory cortex
hippocampal formation
neocortex
striatum
cerebral cortex
pallidum
dorsal plus ventral thalamus
hypothalamus
midbrain
10x 3' v2
10x 3' v3
4,767
0
Whole Mouse Brain Taxonomy, Hypothalamic neurons
Mus musculus
hypothalamus
dorsal plus ventral thalamus
pallidum
midbrain
striatum
pons
neocortex
olfactory cortex
cerebral cortex
medulla oblongata
hippocampal formation
10x 3' v2
10x 3' v3
171,281
0
Whole Mouse Brain Taxonomy, Midbrain neurons
Mus musculus
midbrain
dorsal plus ventral thalamus
pons
hypothalamus
medulla oblongata
cerebellum
pallidum
striatum
hippocampal formation
neocortex
cerebral cortex
10x 3' v2
10x 3' v3
209,303
0
Whole Mouse Brain Taxonomy, 05 OB-IMN GABA
Mus musculus
olfactory cortex
striatum
neocortex
cerebral cortex
hippocampal formation
pallidum
dorsal plus ventral thalamus
hypothalamus
midbrain
pons
10x 3' v2
10x 3' v3
107,502
0
Whole Mouse Brain Taxonomy, 18 TH Glut
Mus musculus
dorsal plus ventral thalamus
hypothalamus
midbrain
pallidum
striatum
hippocampal formation
10x 3' v2
10x 3' v3
115,401
0
Whole Mouse Brain Taxonomy, Pallium GABAergic interneurons
Mus musculus
neocortex
hippocampal formation
cerebral cortex
olfactory cortex
striatum
pallidum
hypothalamus
midbrain
dorsal plus ventral thalamus
pons
10x 3' v2
10x 3' v3
261,117
0
Whole Mouse Brain Taxonomy, Cerebellar neurons
Mus musculus
cerebellum
medulla oblongata
pons
midbrain
striatum
hypothalamus
10x 3' v3
10x 3' v2
191,986
0
Whole Mouse Brain Taxonomy, 04 DG-IMN Glut
Mus musculus
hippocampal formation
olfactory cortex
cerebral cortex
striatum
neocortex
dorsal plus ventral thalamus
midbrain
pallidum
10x 3' v2
10x 3' v3
84,352
0
Whole Mouse Brain Taxonomy, Cerebral nuclei neurons
Mus musculus
striatum
pallidum
hypothalamus
cerebral cortex
olfactory cortex
neocortex
dorsal plus ventral thalamus
hippocampal formation
midbrain
pons
medulla oblongata
10x 3' v2
10x 3' v3
258,176
0
Whole Mouse Brain Taxonomy, Pons neurons
Mus musculus
pons
midbrain
medulla oblongata
hypothalamus
cerebellum
dorsal plus ventral thalamus
10x 3' v2
10x 3' v3
44,995
0
Whole Mouse Brain Taxonomy, 01 IT-ET Glut
Mus musculus
neocortex
hippocampal formation
olfactory cortex
cerebral cortex
striatum
pallidum
midbrain
hypothalamus
dorsal plus ventral thalamus
pons
10x 3' v2
10x 3' v3
1,095,484
0
Myeloid cells from human liver dataset
Homo sapiens
liver
10x 3' v2
10x 3' v3
40,821
0
Lymphoid cells from human liver dataset
Homo sapiens
liver
10x 3' v3
10x 3' v2
105,790
0
All cells from human liver dataset
Homo sapiens
liver
10x 3' v3
10x 3' v2
167,598
0
CD45 negative cells from human liver dataset
Homo sapiens
liver
10x 3' v3
10x 3' v2
15,481
0
HMBA Consensus Basal Ganglia Atlas: Non-neurons
Homo sapiens
Macaca mulatta
Callithrix jacchus
brain
10x multiome
815,521
0
HMBA Consensus Basal Ganglia Atlas
Homo sapiens
Macaca mulatta
Callithrix jacchus
brain
10x multiome
1,896,133
0
HMBA Consensus Basal Ganglia Atlas: Interneurons
Macaca mulatta
Homo sapiens
Callithrix jacchus
brain
10x multiome
217,240
0
HMBA Consensus Basal Ganglia Atlas: Dopaminergic
Macaca mulatta
Homo sapiens
Callithrix jacchus
brain
10x multiome
8,775
0
An integrated cell atlas of the human lung in health and disease (core)
Homo sapiens
lung parenchyma
respiratory airway
nose
10x 3' v2
10x 5' v1
10x 3' v3
10x 5' v2
10x 3' v1
584,944
0
Cross-species Spinal Cord Atlas: Non-Neurons
Mus musculus
Macaca mulatta
Homo sapiens
Spinal cord
10x multiome
122,011
0
Cross-species Spinal Cord Atlas: Glutamatergic
Mus musculus
Macaca mulatta
Homo sapiens
Spinal cord
10x multiome
57,219
0
Cross-species Spinal Cord Atlas: GABAergic
Macaca mulatta
Mus musculus
Homo sapiens
Spinal cord
10x multiome
48,313
0
Cross-species Spinal Cord Atlas: Cholinergic
Mus musculus
Macaca mulatta
Homo sapiens
Spinal cord
10x multiome
3,549
4
Cross-species Spinal Cord Atlas
Mus musculus
Macaca mulatta
Homo sapiens
Spinal cord
10x multiome
230,825
25
Single Cell Atlas of Human Ocular Surface scRNA-seq: Cornea, Limbus, Sclera
Homo sapiens
corneo-scleral junction
cornea
sclera
ocular surface region
tunica fibrosa of eyeball
substantia propria of cornea
corneal epithelium
corneal endothelium
10x 3' v3
10x multiome
10x 3' v2
815,769
0
Single Cell Atlas of Human Ocular Surface snRNA-seq: Cornea, Limbus, Sclera
Homo sapiens
cornea
corneo-scleral junction
sclera
10x 3' v3
147,484
0
Single cell atlas of the human trabecular meshwork and ciliary body - scRNA-seq
Homo sapiens
ciliary body
eye trabecular meshwork
10x 3' v3
10x 3' v2
10x 5' v2
332,995
0
Single cell atlas of the human trabecular meshwork and ciliary body - snRNA-seq
Homo sapiens
ciliary body
eye trabecular meshwork
uvea
10x 3' v3
1,102,250
0