Cross-species Spinal Cord Atlas: Cholinergic

Summary

HMBA/AIBS: Cross-species Spinal Cord

Metadata

Dataset Type

Integrated. The file includes an integrated collection of datasets.

Total Cells

3,549

organism

Mus musculus (2,368 cells)Macaca Mulatta (1,149 cells)Homo sapiens (32 cells)

tissue

Spinal cord

assay

10x multiome

disease

normal

anatomical_region

unknown (1,353 cells)Thoracic (616 cells)Lumbar (615 cells)Sacral (485 cells)Cervical (480 cells)

species

Mouse (2,368 cells)Macaque (1,149 cells)Human (32 cells)

nearest_development_origin

nan (2,121 cells)MN (891 cells)dl6 (341 cells)V0 (42 cells)V1 (40 cells)FP (39 cells)Outliers (31 cells)dl3 (17 cells)RP (6 cells)V3 (4 cells)V2b (3 cells)dl2 (2 cells)Null_Progenitor (2 cells)dl1 (2 cells)p3 (2 cells)pMN (2 cells)V2a (2 cells)p0 (1 cells)dp3 (1 cells)

spinalcord_dissection

unknown (2,400 cells)Ventral_horn (886 cells)Unbiased (263 cells)

donor_name

Mouse_1 (2,368 cells)QN24.26.001 (426 cells)QN23.26.012 (228 cells)QN24.26.004 (191 cells)QN23.26.001 (151 cells)QN22.26.011 (96 cells)QN22.26.016 (57 cells)H20.30.002 (29 cells)H19.30.001 (2 cells)H19.30.003 (1 cells)

Cell Labels

Class (1)

3,549 cells

Cholinergic

3,549

Cluster (15)

3,549 cells

260

751

136

694

140

437

139

217

137

214

245

211

241

160

243

154

135

150

238

128

239

127

138

87

261

80

262

77

244

62

Group (5)

3,549 cells

Alpha-MN

1,498

Cholinergic-IN

919

Visceral Motor Neurons

831

Gamma-MN

214

Gamma_star-MN

87

Subclass (3)

3,549 cells

Skeletal Motor Neurons

1,799

Cholinergic-IN

919

Visceral Motor Neurons

831