Cell Annotation Platform
Home
Datasets
Cell Labels
Blog
Docs
Sign In / Join
View
Aggregated
Individual
Query
organism
Callithrix jacchus
Homo sapiens
Macaca mulatta
Mus musculus
tissue
assay
Full Name
Synonyms
Marker Gene Evidence
Organisms
Tissues
neural crest derived neuron
CL:0000029
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
glioblast
CL:0000030
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
neuroblast (sensu Vertebrata)
CL:0000031
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
neuroplacodal cell
CL:0000032
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
stem cell
CL:0000034
animal stem cell
unknown
SMOC2
LRIG1
OLFM4
RGMB
ASCL2
LGR5
unknown
Homo sapiens
ileum
intestine
duodenum
colon
gallbladder
prostate gland
corpus
thyroid gland
stomach
hindbrain
dorsal plus ventral thalamus
cerebellum
bronchus
common bile duct
pancreas
alveolar sac
pyloric antrum
midbrain tegmentum
liver
midbrain tectum
ventral part of telencephalon
biliary system
telencephalon
brain
salivary gland epithelium
arcuate nucleus of hypothalamus
choroid plexus
lung
cerebral cortex
nasopharynx
intrahepatic bile duct
hematopoietic stem cell
CL:0000037
blood forming stem cell
HSC
hemopoietic stem cell
megakaryocyte/erythrocyte progenitor
CFU-EM
colony forming unit erythroid megakaryocyte
Meg/E progenitor
megakaryocyte/erythroid progenitor cell
colony forming unit hematopoietic
MEP
CFU-MegE
MEG3
CD164
SPINK2
HLF
PRSS57
MLLT3
CLU
BST2
CRHBP
EMCN
TCEAL2
AVP
CD34
Homo sapiens
nose
lung parenchyma
respiratory airway
blood
bone marrow
neural stem cell
CL:0000047
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
ciliated cell
CL:0000064
unknown
FOXJ1
unknown
Homo sapiens
ileum
intestine
bronchus
alveolar sac
duodenum
lung
colon
nasopharynx
gallbladder
prostate gland
corpus
thyroid gland
stomach
hindbrain
dorsal plus ventral thalamus
cerebellum
common bile duct
pancreas
pyloric antrum
midbrain tegmentum
liver
midbrain tectum
ventral part of telencephalon
biliary system
telencephalon
brain
salivary gland epithelium
arcuate nucleus of hypothalamus
choroid plexus
cerebral cortex
intrahepatic bile duct
5260 Ependymal NN_2, 1176 Ependymal NN_2, ependymal cell, 5257 Ependymal NN_1, 5259 Ependymal NN_1, 5256 Ependymal NN_1, 5254 Ependymal NN_1, 5252 Ependymal NN_1, 1175 Ependymal NN_1, 5253 Ependymal NN_1, 5258 Ependymal NN_1, 5261 Ependymal NN_2, 5262 Ependymal NN_2, 5255 Ependymal NN_1, 5251 Ependymal NN_1
Closest:
CL:0000065
unknown
Ccdc153
Tmem212
Sntn
Rarres2
Zic4
Lhfp
Slc43a3
Hoxc4
Wt1
Six3
Ecrg4
Pgm5
Lamb1
Cldn2
Col6a5
Adgrl3
Pax3
Ucma
Vmn2r30
Folr1
Ifitm1
Qrfp
C4b
Dnah3
Ccdc146
Ttc6
Gm10714
Dnah12
Cd36
Mus musculus
hippocampal formation
pons
cerebral cortex
midbrain
olfactory cortex
striatum
neocortex
pallidum
dorsal plus ventral thalamus
cerebellum
hypothalamus
medulla oblongata
epithelial cell
CL:0000066
epitheliocyte
unknown
CDH1
LGALS4
COL17A1
ELF3
CDX2
FOXP2
CLDN4
unknown
SFN
S100A11
APOBEC3A
TOP2A
DSP
MIR205HG
EPCAM
PERP
MAL2
REG1A
UPK3BL1
IKZF2
CLDN1
CLU
CXCL14
SMC4
RPS19
RASSF6
STMN1
SOX6
S100A2
KRT3
KRT8
KAZN
KRT5
SDCBP2
ALDH3A1
S100A4
EZR
PHLDB2
DSC2
TACSTD2
CACNA1D
LYPD3
RASAL2
NKAIN2
MYH14
B4GALNT3
ECT2
IVNS1ABP
ST14
UBE2C
HMGA1
FOXN3
ANLN
FA2H
DIAPH3
FXYD3
GJB6
WNK2
TGFBI
MOXD1
TENM2
ADIRF
CTSV
KRT20
MIR924HG
SH3RF1
UPK1B
CSRP2
SH3BGRL3
DENND2C
FGFBP1
DST
TNFRSF12A
ITGA2
CIT
ALDH1A3
ARHGEF3
DSG3
TKT
L3MBTL4
CSTB
DAPL1
SLC20A1
LAMA3
EGFR
ERICH5
DNAJB6
NQO1
POLQ
S100G
C4orf3
KRT12
KRT19
MEIS1
KRT17
SLCO3A1
KRT14
CENPP
TPT1
Homo sapiens
cornea
sclera
corneo-scleral junction
substantia propria of cornea
ocular surface region
tunica fibrosa of eyeball
corneal endothelium
corneal epithelium
ileum
bronchus
alveolar sac
lung
nasopharynx
intestine
duodenum
colon
gallbladder
prostate gland
corpus
thyroid gland
stomach
hindbrain
dorsal plus ventral thalamus
cerebellum
common bile duct
pancreas
pyloric antrum
midbrain tegmentum
liver
midbrain tectum
ventral part of telencephalon
biliary system
telencephalon
brain
salivary gland epithelium
arcuate nucleus of hypothalamus
choroid plexus
cerebral cortex
intrahepatic bile duct
blood vessel endothelial cell
CL:0000071
unknown
arteriolar endothelial cell
arterial endothelial cell
venous endothelial cell
venular endothelial cell
PECAM1
FLT1
MCTP1
SLC2A1
PCSK5
BTNL9
ARL15
VEGFC
CP
CDH11
ALPL
TAGLN
RASGRF2
PTPRM
LDB2
PRSS23
PTPRG
MECOM
THSD7A
A2M
PTGDS
B2M
SRGN
HLA-B
SELE
CLDN5
ELMO1
ADGRL4
Homo sapiens
optic disc
cranial nerve II
cornea
ciliary body
corneo-scleral junction
eye trabecular meshwork
sclera
right lobe of liver
substantia propria of cornea
liver
ocular surface region
uvea
caudate lobe of liver
corneal epithelium
left lobe of liver
tunica fibrosa of eyeball
corneal endothelium
Cycling T cell, T cell
CL:0000084
T lymphocyte
T-cell
T-lymphocyte
immature T cell
mature T cell
Proliferating T-lymphocyte
Cycling T lymphocyte
Proliferating T lymphocyte
Cycling T-cell
Cycling T-lymphocyte
Proliferating T-cell
unknown
CD3D
THEMIS
CD3E
CAMK4
IL7R
CD3G
CD96
BCL11B
CD247
TRAC
SIT1
TOP2A
PCNA
LEF1
MKI67
CXCR3
GPR171
TRBC1
PCLAF
CCR7
GBP1
RPS12
DUSP4
IL32
TRAT1
GZMA
RPL22
SH2D1A
TC2N
CD2
GZMK
CD40LG
CD8B
CD8A
RPS29
MT1E
Homo sapiens
kidney
ileum
chorioretinal region
pigmented layer of retina
liver
optic disc
blood
bone marrow
cranial nerve II
eyeball of camera-type eye
palatine tonsil
optic choroid
cortex of kidney
renal medulla
renal papilla
Monocyte-derived Kupffer cell, Kupffer cell
CL:0000091
unknown
MoKCs
KCs
Resident Kupffer cells
VCAM1
CD5L
TIMD4
C1QC
FCGBP
NRP1
FLT1
KCNAB1
RNASE1
LILRB5
SELENBP1
CDH5
IGSF21
MARCO
BCAM
ITGAD
SLCO2B1
MRC1
NDST3
SELENOP
CD14
SLC16A9
PLTP
Homo sapiens
liver
ileum
right lobe of liver
gallbladder
intestine
prostate gland
biliary system
corpus
thyroid gland
stomach
caudate lobe of liver
duodenum
salivary gland epithelium
left lobe of liver
lung
bronchus
common bile duct
pancreas
alveolar sac
colon
nasopharynx
intrahepatic bile duct
pyloric antrum
granulocyte
CL:0000094
granular leucocyte
granular leukocyte
polymorphonuclear leukocyte
CXCL8
CXCR2
NAMPT
SOD2
S100A8
Homo sapiens
palatine tonsil
mast cell
CL:0000097
mastocyte
histaminocyte
labrocyte
tissue basophil
KIT
CPA3
TPSAB1
TPSB2
MS4A2
SLC24A3
IL1RL1
SRGN
CD63
ANXA1
FCER1G
HDC
ACSL4
SAMSN1
HPGDS
Homo sapiens
chorioretinal region
kidney
ciliary body
eye trabecular meshwork
ileum
substantia propria of cornea
cornea
ocular surface region
uvea
cranial nerve II
lung parenchyma
palatine tonsil
optic choroid
tunica fibrosa of eyeball
cortex of kidney
corneal endothelium
renal medulla
sclera
nose
pigmented layer of retina
optic disc
corneal epithelium
corneo-scleral junction
eyeball of camera-type eye
respiratory airway
renal papilla
interneuron
CL:0000099
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
5311 Endo NN_1, cycling endothelial cells, 5310 Endo NN_1, 5309 Endo NN_1, endothelial cell, 1193 Endo NN_1
CL:0000115
endotheliocyte
unknown
PECAM1
FLT1
CD34
PTPRB
DOCK4
unknown
CLDN5
Ly6c1
EMCN
CALCRL
MCTP1
Slco1a4
PLAT
LDB2
CDH5
KDR
ZNF385D
FN1
MEIS2
ELMO1
ESAM
TCF4
ADGRL4
TOP2A
TSHZ2
SLC2A3
MKI67
KALRN
AKAP12
LRMDA
STOX2
Alpl
A2M
B2M
MEF2C
VWF
ARL15
RALGAPA2
Adgrl4
Fmo2
ARHGAP26
TGFBR2
CDK1
SPARCL1
LINC02147
SHANK3
Homo sapiens
Mus musculus
dorsal plus ventral thalamus
cerebellum
cerebral cortex
hippocampal formation
pallidum
striatum
midbrain
olfactory cortex
neocortex
pons
hypothalamus
medulla oblongata
cornea
kidney
corneo-scleral junction
ileum
sclera
hindbrain
midbrain tegmentum
ventral part of telencephalon
arcuate nucleus of hypothalamus
intestine
cortex of kidney
renal medulla
midbrain tectum
telencephalon
brain
duodenum
choroid plexus
colon
renal papilla
substantia propria of cornea
ocular surface region
tunica fibrosa of eyeball
corneal endothelium
corneal epithelium
ciliary body
eye trabecular meshwork
prostate gland
corpus
stomach
bronchus
pancreas
liver
lung
nasopharynx
intrahepatic bile duct
gallbladder
thyroid gland
uvea
common bile duct
alveolar sac
pyloric antrum
biliary system
salivary gland epithelium
5237 Astroependymal NN_1, 321 Astroependymal NN, 31 OPC-Oligo, 5240 Astroependymal NN_2, 1170 Astroependymal NN_2, 1169 Astroependymal NN_1, 5241 Astroependymal NN_3, 30 Astro-Epen, glial cell, 1171 Astroependymal NN_3, 5242 Astroependymal NN_3, 5239 Astroependymal NN_1, 5238 Astroependymal NN_1
Closest:
CL:0000125
neuroglial cell
neuroglia
glia
enteric glial cell
unknown
Gfap
Prokr2
unknown
Wt1
Cnmd
SPARC
Myoc
Slc7a11
Slit2
Aqp4
CLU
Wif1
Six3
Id1
Zic1
Slc13a4
Fabp7
Rspo3
Zic4
S100B
Agt
Ano1
Gm29683
Itih3
C230072F16Rik
Gjb6
PLP1
CRYAB
Cubn
Mus musculus
Homo sapiens
dorsal plus ventral thalamus
cerebellum
cerebral cortex
hippocampal formation
midbrain
olfactory cortex
neocortex
pallidum
pons
striatum
hypothalamus
medulla oblongata
ileum
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
arcuate nucleus of hypothalamus
choroid plexus
1159 Astro-NT NN_1, 1167 Astro-OLF NN_2, 5219 Astro-TE NN_1, 5227 Astro-TE NN_3, 1160 Astro-NT NN_2, 5234 Astro-OLF NN_2, 1161 Astro-TE NN_1, 5225 Astro-TE NN_3, 5210 Astro-NT NN_1, 1164 Astro-TE NN_4, 1168 Astro-OLF NN_3, 5212 Astro-NT NN_1, 5235 Astro-OLF NN_3, 5230 Astro-TE NN_5, 5224 Astro-TE NN_3, 5229 Astro-TE NN_5, 5236 Astro-OLF NN_3, 5216 Astro-NT NN_2, 5214 Astro-NT NN_2, 5220 Astro-TE NN_1, 5231 Astro-OLF NN_1, astrocyte, 5222 Astro-TE NN_2, 1165 Astro-TE NN_5, 5232 Astro-OLF NN_1, 5208 Astro-NT NN_1, 5211 Astro-NT NN_1, 5218 Astro-TE NN_1, 5228 Astro-TE NN_4, Astrocyte, 1163 Astro-TE NN_3, 5226 Astro-TE NN_3, 5233 Astro-OLF NN_2, 1162 Astro-TE NN_2, 1166 Astro-OLF NN_1, 5213 Astro-NT NN_1, 5217 Astro-NT NN_2, 5223 Astro-TE NN_2, 5209 Astro-NT NN_1, 5215 Astro-NT NN_2, 5221 Astro-TE NN_1
Closest:
CL:0000127
unknown
astrocytic glia
optic nerve and optic nerve head astrocyte glia
optic nerve head astrocyte glia
retina astrocyte glia
optic nerve astrocyte glia
retina astrocyte glia that expresses NLGN1+
optic nerve astrocyte glia that expresses AFF3
Gja1
S1pr1
Aqp4
Gfap
Myoc
Hs3st3a1
Thbs4
A330076C08Rik
Gria2
GFAP
Sfrp1
Sfrp5
Agt
SPON1
AQP4
AC078923.1
C4b
AC012405.1
C230072F16Rik
GNG12-AS1
unknown
LINC00836
Gm29683
Lhx2
AC098829.1
Grin2c
AC092957.1
Fbln5
LINC02231
PAX5
AL357507.1
Alpk1
Slc39a12
AC007368.1
Chrdl1
Crym
Prss23
AHNAK
Slc7a10
Ddn
Igfbp2
Slc36a2
S100B
E330013P04Rik
Itih3
STAC2
Ednrb
Cyp26b1
Emx2os
Kcnq3
Dio2
Egfr
Unc13c
Gria1
Hepacam
Atp13a4
Cldn10
Hopx
Otx2
Ranbp3l
Kcne1l
Sptbn2
6530411M01Rik
Dao
Slc25a34
Pcsk6
Galnt15
Dcc
Mecom
Nr2f1
Stk32a
Ano1
Lhfpl3
Kcnk10
Lncpint
Dipk1c
Cd38
Mcm6
Il33
Gm6145
Slco1c1
Adamts18
Kcnq1ot1
Pak1
Camk2a
Ecrg4
Gpc5
Riiad1
Prelp
Cxcl5
Prss35
Zic4
Mdga2
Rasl10b
Fam163a
Shroom3
Six3os1
Mus musculus
Homo sapiens
dorsal plus ventral thalamus
cerebellum
cerebral cortex
hippocampal formation
pallidum
striatum
midbrain
olfactory cortex
neocortex
pons
hypothalamus
medulla oblongata
cranial nerve II
optic disc
hindbrain
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
brain
arcuate nucleus of hypothalamus
choroid plexus
chorioretinal region
fovea centralis
retinal neural layer
peripheral region of retina
macula lutea proper
oligodendrocyte
CL:0000128
oligodendrocyte SVEP1+
oligodendrocyte
oligodendrocyte NAV2+
oligodendrocyte LRRC7+
oligodendrocyte RBFOX1+
unknown
MOBP
MOG
ST18
RBFOX1
LRRC7
SVEP1
NAV2
Gjc3
Cldn11
Homo sapiens
Mus musculus
optic disc
cranial nerve II
hippocampal formation
midbrain
olfactory cortex
neocortex
pallidum
dorsal plus ventral thalamus
cerebellum
pons
cerebral cortex
striatum
hypothalamus
medulla oblongata
microglial cell, 1194 Microglia NN_1, 5312 Microglia NN_1, Microglia
CL:0000129
microglia
unknown
MF.microglia.CNS
brain macrophage
hortega cells
microgliocyte
brain-resident macrophage
microglia CENPP+
microglia RBMS3+
CD74
C1qa
Tmem119
AIF1
unknown
CENPP
RBMS3
Homo sapiens
Mus musculus
dorsal plus ventral thalamus
cerebellum
cerebral cortex
hippocampal formation
pallidum
hindbrain
cranial nerve II
striatum
midbrain
midbrain tegmentum
olfactory cortex
midbrain tectum
ventral part of telencephalon
optic disc
telencephalon
neocortex
brain
arcuate nucleus of hypothalamus
choroid plexus
pons
hypothalamus
medulla oblongata
chorioretinal region
fovea centralis
retinal neural layer
peripheral region of retina
macula lutea proper
neurectodermal cell
CL:0000133
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
hepatocyte
CL:0000182
unknown
ERRFI1
CYP3A4
CUX2
CP
SBDS
CYP2E1
CEBPA
RPLP1
SERPINE1
CYP3A5
MT-ND3
ASGR1
MT-ATP6
APOM
HNF4A
ZNF385D
RPL39
UGT2B10
FGA
RPL41
HSPA5
ACSL1
CYP3A43
RPS6
SORBS2
BAAT
CYP2C8
HAL
RBP4
MT-RNR2
ALB
MT-CO3
UGT2B7
Homo sapiens
liver
right lobe of liver
caudate lobe of liver
left lobe of liver
ileum
gallbladder
intestine
prostate gland
biliary system
corpus
thyroid gland
stomach
duodenum
salivary gland epithelium
lung
bronchus
common bile duct
pancreas
alveolar sac
colon
nasopharynx
intrahepatic bile duct
pyloric antrum
mesodermal cell, mesoderm 1 (HAND1), mesoderm 2 (ZEB2)
Closest:
CL:0000222
unknown
ZEB2
HAND2
HAND1
PITX2
unknown
Homo sapiens
ileum
intestine
duodenum
colon
gallbladder
prostate gland
corpus
thyroid gland
stomach
bronchus
common bile duct
pancreas
alveolar sac
pyloric antrum
liver
biliary system
salivary gland epithelium
lung
nasopharynx
intrahepatic bile duct
hindbrain
dorsal plus ventral thalamus
cerebellum
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
brain
arcuate nucleus of hypothalamus
choroid plexus
cerebral cortex
platelet
CL:0000233
anucleate thrombocyte
enucleate thrombocyte
blood platelet
DNM3
GP1BB
ITGA2B
TUBB1
PPBP
PF4
Homo sapiens
chorioretinal region
blood
Monocytes/Macrophages, Cycling myeloid, macrophage
CL:0000235
histiocyte
unknown
macrophage JUN+
macrophage VCAN+
macrophage
macrophage RRM2+
macrophage RORA+
MRC1
CD163
C1QB
C1QA
F13A1
LYZ
CST3
PLTP
CD68
C1QC
TOP2A
FCGBP
DOCK4
CD83
CXCL8
USP53
CD5L
SDC3
CTD-2337J16.1
RORA
MKI67
AIF1
IGSF21
KYNU
SLCO2B1
NDST3
CCL3
PCLAF
A2M
SRGN
CD74
MSR1
JUN
RRM2
LILRB5
VCAN
TYROBP
SBDS
HLA-DRA
ID3
SIGLEC1
FOLR2
S100A9
HLA-DRB1
S100A8
Homo sapiens
optic disc
cranial nerve II
chorioretinal region
pigmented layer of retina
liver
ciliary body
eyeball of camera-type eye
palatine tonsil
optic choroid
eye trabecular meshwork
ileum
substantia propria of cornea
cornea
ocular surface region
uvea
corneal epithelium
corneo-scleral junction
tunica fibrosa of eyeball
corneal endothelium
sclera
Activated B cell, B cell
CL:0000236
B lymphocyte
B-cell
B-lymphocyte
BANK1
MS4A1
CD79A
BLK
BACH2
FCRLA
VPREB3
CD19
FCRL1
CD74
PAX5
FCER2
LINC00926
HLA-DRA
CDK14
RP11-693J15.5
IGHM
CD83
CXCR4
AFF3
STK4
OSBPL10
GNG7
MYC
CREB3L2
CCL3
CD37
B2M
RP5-887A10.1
TXNDC5
FCRL2
EGR3
HLA-B
LAPTM5
AC079767.4
NFKB2
IGHD
REL
CD69
CD22
HLA-DRB1
Homo sapiens
kidney
chorioretinal region
cranial nerve II
liver
optic disc
ciliary body
eye trabecular meshwork
ileum
substantia propria of cornea
cornea
ocular surface region
uvea
lung parenchyma
palatine tonsil
optic choroid
tunica fibrosa of eyeball
cortex of kidney
corneal endothelium
renal medulla
sclera
nose
pigmented layer of retina
blood
corneal epithelium
corneo-scleral junction
eyeball of camera-type eye
respiratory airway
renal papilla
eye photoreceptor cell
CL:0000287
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
extracellular matrix secreting cell
CL:0000327
unknown
unknown
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
glioblast (sensu Vertebrata)
CL:0000339
spongioblast
BCAN
TNC
HOPX
Homo sapiens
cerebral cortex
midbrain tegmentum
midbrain tectum
ventral part of telencephalon
telencephalon
hindbrain
brain
dorsal plus ventral thalamus
cerebellum
arcuate nucleus of hypothalamus
choroid plexus
