Cell Annotation Platform
v2
Consensus Spinal Cord Atlas
Cross-species Spinal Cord Atlas: Non-Neurons
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Cross-species Spinal Cord Atlas: Non-Neurons
Main
Summary
Feedback Received
Cell Metadata
Subclass
Class
Cluster
Group
Summary
HMBA/AIBS: Cross-species Spinal Cord
Metadata
Dataset Type
Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.
Total Cells
122,011
species
Mouse
(52,448 cells)
Macaque
(51,656 cells)
Human
(17,907 cells)
nearest_development_origin
nan
(60,106 cells)
dp2
(8,246 cells)
FP
(8,141 cells)
dp3
(7,479 cells)
dp6
(6,070 cells)
Null_Neuron
(4,915 cells)
RP
(3,898 cells)
Null_Progenitor
(3,356 cells)
dp1
(3,317 cells)
pMN
(2,780 cells)
dp4
(2,262 cells)
dp5
(2,051 cells)
p3
(1,805 cells)
p1
(1,599 cells)
p0
(1,070 cells)
V2a
(955 cells)
dl5
(777 cells)
p2
(732 cells)
V1
(681 cells)
V2b
(443 cells)
Outliers
(377 cells)
MN
(353 cells)
dl2
(317 cells)
dl3
(131 cells)
V0
(72 cells)
dl4
(45 cells)
dl1
(19 cells)
V3
(12 cells)
dl6
(2 cells)
spinalcord_dissection
unknown
(70,355 cells)
Unbiased
(29,257 cells)
Ventral_horn
(22,399 cells)
donor_name
Mouse_1
(52,448 cells)
QN24.26.001
(23,086 cells)
H20.30.002
(15,686 cells)
QN24.26.004
(14,952 cells)
QN22.26.011
(4,474 cells)
QN22.26.016
(3,566 cells)
QN23.26.012
(3,335 cells)
QN23.26.001
(2,243 cells)
H19.30.003
(1,193 cells)
H19.30.001
(1,028 cells)
organism
Mus musculus
(52,448 cells)
Macaca Mulatta
(51,656 cells)
Homo sapiens
(17,907 cells)
tissue
Spinal cord
assay
10x multiome
disease
normal
anatomical_region
Cervical
(36,792 cells)
Thoracic
(35,936 cells)
Lumbar
(26,490 cells)
Sacral
(22,713 cells)
unknown
(80 cells)
Cell Labels
Subclass (10)
122,011 cells
Oligo
55,417
Microglia
24,371
Astrocytes
22,423
Ependymal
8,968
OPC
6,344
Vascular
2,004
Endo
1,593
Macrophages
378
Lymphocytes
313
Schwann
200
Class (1)
122,011 cells
Non-Neurons
122,011
Cluster (60)
122,011 cells
2
19,424
17
18,170
105
16,136
25
8,570
106
5,645
145
5,202
104
4,024
9
3,865
7
3,858
14
3,378
103
2,320
24
2,262
18
1,924
21
1,830
45
1,761
109
1,748
20
1,661
108
1,568
143
1,383
8
1,137
107
1,053
34
1,020
150
954
22
799
97
787
4
703
12
703
3
666
237
647
13
608
5
567
98
490
33
470
148
464
26
443
19
433
23
413
147
402
46
378
264
375
15
355
165
339
74
313
110
291
146
283
265
242
11
217
246
200
48
188
6
187
99
181
47
157
10
156
101
135
142
128
35
103
144
85
163
72
242
71
141
67
Group (14)
122,011 cells
Oligo-1
28,359
Oligo-2
26,441
Microglia
24,371
GM Astrocytes
11,844
WM Astrocytes
10,579
Ependymal
8,968
OPC
6,344
Ven/Cap Endothelial
1,593
Meninges
1,593
Oligo Progenitor
617
Pericytes/SM
411
Macrophages
378
Lymphocytes
313
Schwann
200
Molecular Data
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