Cross-species Spinal Cord Atlas

Main

Summary

Feedback Received

Cell Metadata

Summary

HMBA/AIBS: Cross-species Spinal Cord

Metadata

Dataset Type: Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.
Total Cells: 230,825
organism: Mus musculus (107,762 cells)Macaca Mulatta (101,344 cells)Homo sapiens (21,719 cells)
tissue: Spinal cord
assay: 10x multiome
disease: normal
anatomical_region: Cervical (63,312 cells)Thoracic (59,014 cells)Lumbar (55,563 cells)Sacral (50,755 cells)unknown (2,181 cells)
species: Mouse (107,762 cells)Macaque (101,344 cells)Human (21,719 cells)
nearest_development_origin: nan (79,631 cells)dl5 (18,648 cells)dl4 (17,259 cells)V1 (15,734 cells)dl1 (12,268 cells)dl2 (8,447 cells)FP (8,378 cells)dp2 (8,259 cells)dp3 (7,583 cells)dp6 (6,331 cells)Null_Neuron (5,044 cells)V0 (3,971 cells)RP (3,934 cells)dp1 (3,421 cells)Null_Progenitor (3,392 cells)V2b (3,081 cells)pMN (2,841 cells)MN (2,683 cells)V2a (2,670 cells)dl3 (2,351 cells)dp4 (2,337 cells)dl6 (2,286 cells)dp5 (2,051 cells)V3 (1,911 cells)p3 (1,825 cells)p1 (1,605 cells)p0 (1,080 cells)Outliers (1,052 cells)p2 (752 cells)
spinalcord_dissection: unknown (129,481 cells)Unbiased (61,319 cells)Ventral_horn (40,025 cells)
donor_name: Mouse_1 (107,762 cells)QN24.26.001 (40,592 cells)QN24.26.004 (27,053 cells)H20.30.002 (19,338 cells)QN23.26.012 (10,506 cells)QN23.26.001 (8,498 cells)QN22.26.011 (8,337 cells)QN22.26.016 (6,358 cells)H19.30.003 (1,203 cells)H19.30.001 (1,178 cells)

Cell Labels

122,011

56,875

47,969

3,549

344

19,424

18,170

105

16,136

231

10,261

8,570

7,322

5,645

5,202

4,024

3,865

124

3,861

3,858

199

3,616

3,378

216

2,808

2,578

103

2,320

2,262

170

2,115

1,924

1,830

172

1,822

1,761

109

1,748

1,746

1,661

108

1,568

1,473

1,428

1,383

1,292

1,278

1,234

1,150

1,137

1,111

234

1,076

107

1,053

1,049

257

1,035

116

1,030

1,020

992

973

954

849

846

844

837

834

220

832

251

830

119

811

799

222

798

791

787

260

751

741

207

709

703

136

694

690

688

680

674

666

237

647

181

636

158

616

608

605

113

590

169

584

567

556

555

173

551

183

533

126

533

523

120

514

247

514

512

223

511

153

510

508

266

500

498

492

490

485

481

479

472

470

148

464

217

458

161

454

451

443

111

441

224

440

140

437

433

210

432

428

213

424

160

415

413

185

410

407

406

403

402

401

400

117

386

156

385

383

378

264

375

374

360

355

176

353

122

352

230

351

349

348

346

344

343

340

165

339

326

118

323

322

318

313

311

310

309

303

300

297

297

291

284

283

282

280

171

274

194

273

196

271

265

264

212

258

257

253

168

250

248

188

246

265

242

178

236

228

256

222

123

221

217

217

214

211

211

207

205

228

205

133

204

246

200

197

196

203

193

192

225

192

188

187

202

186

232

185

248

184

181

233

180

200

174

172

172

168

168

161

161

161

160

157

156

154

152

150

146

145

144

144

142

137

135

132

128

128

128

127

126

126

124

121

118

117

115

114

113

112

190

112

186

109

103

102

28,359

26,441

24,371

17,172

13,474

11,844

10,579

8,968

6,344

5,628

5,009

4,751

4,304

4,196

3,768

3,743

3,498

3,444

3,418

3,348

3,268

2,716

2,641

2,290

2,134

2,124

2,012

1,927

1,638

1,620

1,593

1,593

1,512

1,498

1,091

1,034

919

Visceral Motor Neurons

831

818

800

743

723

617

411

378

344

313

214

200

55,417

34,322

24,371

22,423

22,101

18,483

17,172

8,968

6,662

6,344

5,381

2,004

Skeletal Motor Neurons

1,799

Endo

1,593

Cholinergic-IN

919

Visceral Motor Neurons

831

723

378

344

313

200

Cross-species Spinal Cord Atlas

Main

Cell Metadata

Summary

HMBA/AIBS: Cross-species Spinal Cord

Metadata

Dataset Type: Single. The file includes a single dataset whereby “dataset” means a single library or a set of technical replicates that can be combined without having to worry about the associated batch effect.
Total Cells: 230,825
organism: Mus musculus (107,762 cells)Macaca Mulatta (101,344 cells)Homo sapiens (21,719 cells)
tissue: Spinal cord
assay: 10x multiome
disease: normal
anatomical_region: Cervical (63,312 cells)Thoracic (59,014 cells)Lumbar (55,563 cells)Sacral (50,755 cells)unknown (2,181 cells)
species: Mouse (107,762 cells)Macaque (101,344 cells)Human (21,719 cells)
nearest_development_origin: nan (79,631 cells)dl5 (18,648 cells)dl4 (17,259 cells)V1 (15,734 cells)dl1 (12,268 cells)dl2 (8,447 cells)FP (8,378 cells)dp2 (8,259 cells)dp3 (7,583 cells)dp6 (6,331 cells)Null_Neuron (5,044 cells)V0 (3,971 cells)RP (3,934 cells)dp1 (3,421 cells)Null_Progenitor (3,392 cells)V2b (3,081 cells)pMN (2,841 cells)MN (2,683 cells)V2a (2,670 cells)dl3 (2,351 cells)dp4 (2,337 cells)dl6 (2,286 cells)dp5 (2,051 cells)V3 (1,911 cells)p3 (1,825 cells)p1 (1,605 cells)p0 (1,080 cells)Outliers (1,052 cells)p2 (752 cells)
spinalcord_dissection: unknown (129,481 cells)Unbiased (61,319 cells)Ventral_horn (40,025 cells)
donor_name: Mouse_1 (107,762 cells)QN24.26.001 (40,592 cells)QN24.26.004 (27,053 cells)H20.30.002 (19,338 cells)QN23.26.012 (10,506 cells)QN23.26.001 (8,498 cells)QN22.26.011 (8,337 cells)QN22.26.016 (6,358 cells)H19.30.003 (1,203 cells)H19.30.001 (1,178 cells)