All cells from human liver dataset

Main

Cell Metadata

Summary

All cells (167,598) profiled by a combination of single cell, single nuclei and CITE-Seq from patients undergoing cholecystectomy, gastric bypass or resection due to metastatic colorectal cancer. Corresponds to Figure 4B in publication.

Metadata

Dataset Type: Integrated. The file includes an integrated collection of datasets.
Total Cells: 167,598
organism: Homo sapiens
tissue: liver
assay: 10x 3' v3 (96,672 cells)10x 3' v2 (70,926 cells)
disease: normal
reported_diseases: [metastatic malignant neoplasm,colorectal cancer] (61,404 cells)[squamous cell carcinoma,prostate cancer,colorectal cancer,chronic obstructive pulmonary disease] (23,897 cells)[thyroid tumor,spinal stenosis,bursitis,chronic kidney disease,type 2 diabetes mellitus,cholecystolithiasis,prostatitis,cataract] (14,539 cells)[morbid obesity,hypothyroidism] (10,891 cells)[asthma,obesity disorder,nasal cavity polyp,cholecystolithiasis] (9,350 cells)[cystadenocarcinoma,Parkinson disease,hepatocellular carcinoma,type 2 diabetes mellitus,abdominal obesity-metabolic syndrome,hemorrhoid] (8,524 cells)[obesity disorder,cholecystolithiasis] (8,111 cells)[endometriosis,hydrosalpinx,vitamin deficiency disorder,hepatocellular adenoma] (6,295 cells)[injury,migraine disorder,meningitis] (6,077 cells)[coronary artery disorder,obstructive sleep apnea syndrome,type 2 diabetes mellitus,obesity disorder,depressive disorder,hypertensive disorder] (5,403 cells)[cataract,carpal tunnel syndrome,cholecystolithiasis] (4,669 cells)[hepatocellular adenoma] (3,013 cells)[morbid obesity,hyperlipidemia,abscess,urticaria,pulmonary arterial hypertension,acute myocardial infarction] (1,664 cells)[chronic kidney disease,ovarian cyst,obstructive sleep apnea syndrome,pulmonary arterial hypertension,type 2 diabetes mellitus,congenital diaphragmatic hernia,cystic hygroma,pituitary gland adenoma,cholecystolithiasis,idiopathic progressive polyneuropathy,hemorrhoid] (1,602 cells)[cholelithiasis,obesity disorder] (1,480 cells)[morbid obesity,spinal stenosis,carpal tunnel syndrome,Hashimoto thyroiditis,insomnia,gastroesophageal reflux disease] (610 cells)[type 1 diabetes mellitus,abscess] (58 cells)[obesity disorder] (11 cells)
typeSample: scRnaSeq (82,936 cells)citeSeq (73,580 cells)nucSeq (11,082 cells)
digest: exVivo Collagenase A and DNase (156,516 cells)nuclei (11,082 cells)
sample: CS81 (14,539 cells)CS87 (13,402 cells)CS112 (10,891 cells)CS85 (8,870 cells)CS126 (8,850 cells)CISE07 (8,010 cells)CISE08 (7,545 cells)CISE09 (7,339 cells)CISE06 (7,024 cells)CS41 (6,914 cells)CS44 (6,331 cells)CS46 (6,295 cells)CS108 (5,971 cells)CS43 (5,767 cells)CS110 (5,052 cells)CS42 (4,885 cells)CS83 (4,669 cells)CS34 (4,598 cells)CS170 (4,130 cells)CS171 (3,981 cells)CS101 (3,013 cells)CS109 (2,553 cells)CS167 (2,371 cells)CS166 (2,352 cells)CS32 (2,275 cells)CS33 (2,057 cells)CS71 (1,664 cells)CS111 (1,025 cells)CS161 (834 cells)CS37 (823 cells)CS38 (779 cells)CS169 (680 cells)CS162 (646 cells)CS73 (610 cells)CS127 (500 cells)CS31 (284 cells)ABU8 (58 cells)CS164 (11 cells)
tissue_type: Liver
donor_id: H02 (39,132 cells)H06 (23,897 cells)H16 (22,272 cells)H13 (14,539 cells)H23 (10,891 cells)H25 (9,350 cells)H21 (8,524 cells)H38 (8,111 cells)H07 (6,295 cells)H22 (6,077 cells)H37 (5,403 cells)H14 (4,669 cells)H18 (3,013 cells)H10 (1,664 cells)H04 (1,602 cells)H30 (1,480 cells)H11 (610 cells)H33 (58 cells)H32 (11 cells)
sex: male (84,704 cells)female (82,894 cells)

Cell Labels

T cells

77,355

Mono+mono derived cells

29,639

12,567

10,996

10,894

7,076

5,340

2,834

2,629

2,350

1,273

1,216

1,180

1,125

657

389

All cells from human liver dataset

Main

Summary

Feedback Received

Cell Metadata

author_cell_type

Summary

Metadata

Dataset Type: Integrated. The file includes an integrated collection of datasets.
Total Cells: 167,598
organism: Homo sapiens
tissue: liver
assay: 10x 3' v3 (96,672 cells)10x 3' v2 (70,926 cells)
disease: normal
reported_diseases: [metastatic malignant neoplasm,colorectal cancer] (61,404 cells)[squamous cell carcinoma,prostate cancer,colorectal cancer,chronic obstructive pulmonary disease] (23,897 cells)[thyroid tumor,spinal stenosis,bursitis,chronic kidney disease,type 2 diabetes mellitus,cholecystolithiasis,prostatitis,cataract] (14,539 cells)[morbid obesity,hypothyroidism] (10,891 cells)[asthma,obesity disorder,nasal cavity polyp,cholecystolithiasis] (9,350 cells)[cystadenocarcinoma,Parkinson disease,hepatocellular carcinoma,type 2 diabetes mellitus,abdominal obesity-metabolic syndrome,hemorrhoid] (8,524 cells)[obesity disorder,cholecystolithiasis] (8,111 cells)[endometriosis,hydrosalpinx,vitamin deficiency disorder,hepatocellular adenoma] (6,295 cells)[injury,migraine disorder,meningitis] (6,077 cells)[coronary artery disorder,obstructive sleep apnea syndrome,type 2 diabetes mellitus,obesity disorder,depressive disorder,hypertensive disorder] (5,403 cells)[cataract,carpal tunnel syndrome,cholecystolithiasis] (4,669 cells)[hepatocellular adenoma] (3,013 cells)[morbid obesity,hyperlipidemia,abscess,urticaria,pulmonary arterial hypertension,acute myocardial infarction] (1,664 cells)[chronic kidney disease,ovarian cyst,obstructive sleep apnea syndrome,pulmonary arterial hypertension,type 2 diabetes mellitus,congenital diaphragmatic hernia,cystic hygroma,pituitary gland adenoma,cholecystolithiasis,idiopathic progressive polyneuropathy,hemorrhoid] (1,602 cells)[cholelithiasis,obesity disorder] (1,480 cells)[morbid obesity,spinal stenosis,carpal tunnel syndrome,Hashimoto thyroiditis,insomnia,gastroesophageal reflux disease] (610 cells)[type 1 diabetes mellitus,abscess] (58 cells)[obesity disorder] (11 cells)
typeSample: scRnaSeq (82,936 cells)citeSeq (73,580 cells)nucSeq (11,082 cells)
digest: exVivo Collagenase A and DNase (156,516 cells)nuclei (11,082 cells)
sample: CS81 (14,539 cells)CS87 (13,402 cells)CS112 (10,891 cells)CS85 (8,870 cells)CS126 (8,850 cells)CISE07 (8,010 cells)CISE08 (7,545 cells)CISE09 (7,339 cells)CISE06 (7,024 cells)CS41 (6,914 cells)CS44 (6,331 cells)CS46 (6,295 cells)CS108 (5,971 cells)CS43 (5,767 cells)CS110 (5,052 cells)CS42 (4,885 cells)CS83 (4,669 cells)CS34 (4,598 cells)CS170 (4,130 cells)CS171 (3,981 cells)CS101 (3,013 cells)CS109 (2,553 cells)CS167 (2,371 cells)CS166 (2,352 cells)CS32 (2,275 cells)CS33 (2,057 cells)CS71 (1,664 cells)CS111 (1,025 cells)CS161 (834 cells)CS37 (823 cells)CS38 (779 cells)CS169 (680 cells)CS162 (646 cells)CS73 (610 cells)CS127 (500 cells)CS31 (284 cells)ABU8 (58 cells)CS164 (11 cells)
tissue_type: Liver
donor_id: H02 (39,132 cells)H06 (23,897 cells)H16 (22,272 cells)H13 (14,539 cells)H23 (10,891 cells)H25 (9,350 cells)H21 (8,524 cells)H38 (8,111 cells)H07 (6,295 cells)H22 (6,077 cells)H37 (5,403 cells)H14 (4,669 cells)H18 (3,013 cells)H10 (1,664 cells)H04 (1,602 cells)H30 (1,480 cells)H11 (610 cells)H33 (58 cells)H32 (11 cells)
sex: male (84,704 cells)female (82,894 cells)