All cells from human liver dataset

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Cell Metadata

Endothelial cells

Ontology Term: endothelial cell of hepatic sinusoidCL:1000398
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: LSEC
Category Class of which the cell type is a subclass.: fenestrated endothelial cellCL:0000666
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PTPRB, ADGRL4, CCL14, STAB2, ADGRF5, OIT3, PREX2, KDR, MYCT1, FCN3
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs for this population compared with rest of UMAP (from Table S1 in publication). Note this population is predominantly LSECs hence the gene list but smaller populations of portal and central ECs are also contained in this cluster. This is why no canonical marker genes are included. For more resolution refer to CD45- cell UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: endothelial cell of hepatic sinusoidCL:1000398
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: LSEC
Category Class of which the cell type is a subclass.: fenestrated endothelial cellCL:0000666
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: PTPRB, ADGRL4, CCL14, STAB2, ADGRF5, OIT3, PREX2, KDR, MYCT1, FCN3
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs for this population compared with rest of UMAP (from Table S1 in publication). Note this population is predominantly LSECs hence the gene list but smaller populations of portal and central ECs are also contained in this cluster. This is why no canonical marker genes are included. For more resolution refer to CD45- cell UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual