All cells from human liver dataset

Endothelial cells

Ontology Term

endothelial cell of hepatic sinusoidCL:1000398

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

LSEC

Category

Class of which the cell type is a subclass.

fenestrated endothelial cellCL:0000666

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

PTPRB, ADGRL4, CCL14, STAB2, ADGRF5, OIT3, PREX2, KDR, MYCT1, FCN3

Canonical Marker Genes

unknown

Rationale

Marker genes are top 10 DEGs for this population compared with rest of UMAP (from Table S1 in publication). Note this population is predominantly LSECs hence the gene list but smaller populations of portal and central ECs are also contained in this cluster. This is why no canonical marker genes are included. For more resolution refer to CD45- cell UMAP.

Inherited from author_cell_type

Set of Labels Description

Annotation of cells in dataset based on prior knowledge.

Annotation Method

manual