All cells from human liver dataset

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Cell Metadata

Fibroblasts

Ontology Term: fibroblastCL:0000057
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: liver fibroblasts, hepatic fibroblasts
Category Class of which the cell type is a subclass.: stromal cellCL:0000499
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CARMN, HHIP, COL3A1, COL1A2, PLA2G5, CCBE1, LAMA2, DCN, HAND2-AS1, COLEC10
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs for these cells compared with rest of UMAP (from Table S1 in publication). Population consists primarily of hepatic stellate cells but other populations of fibroblasts are also included hence why there are no canonical genes given. For more granularity refer to CD45- UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: fibroblastCL:0000057
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: liver fibroblasts, hepatic fibroblasts
Category Class of which the cell type is a subclass.: stromal cellCL:0000499
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CARMN, HHIP, COL3A1, COL1A2, PLA2G5, CCBE1, LAMA2, DCN, HAND2-AS1, COLEC10
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs for these cells compared with rest of UMAP (from Table S1 in publication). Population consists primarily of hepatic stellate cells but other populations of fibroblasts are also included hence why there are no canonical genes given. For more granularity refer to CD45- UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual