All cells from human liver dataset

Main

Cell Metadata

Circulating NK/NKT

Full Name: NK and NKT cells
Closest Ontology Term: mature natural killer cellCL:0000824
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: natural killer cellCL:0000623
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FGFBP2, GNLY, CX3CR1, GZMB, ADGRG1, PRSS23, CHST2, SH2D1B, AKR1C3, CLIC3
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs from this population compared with rest of UMAP from Table S1 in publication. No canonical genes because this is a mixed population. Increased resolution can be found in the lymphoid cell UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual

Full Name: NK and NKT cells
Closest Ontology Term: mature natural killer cellCL:0000824
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: natural killer cellCL:0000623
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FGFBP2, GNLY, CX3CR1, GZMB, ADGRG1, PRSS23, CHST2, SH2D1B, AKR1C3, CLIC3
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs from this population compared with rest of UMAP from Table S1 in publication. No canonical genes because this is a mixed population. Increased resolution can be found in the lymphoid cell UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual