T cells

Ontology Term

T cellCL:0000084

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

unknown

Category

Class of which the cell type is a subclass.

lymphocyteCL:0000542

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

IL7R, CD40LG, CD3D, CD3G, CD8B, TRAT1, CD8A, SIT1, GPR171, CD3E

Canonical Marker Genes

CD3E, CD3G, CD3D

Rationale

All T cells (not further divided into subsets). Marker genes are top 10 DEGs for these cells compared to rest of UMAP.

Inherited from author_cell_type

Set of Labels Description

Annotation of cells in dataset based on prior knowledge.

Annotation Method

manual