All cells from human liver dataset

Main

Cell Metadata

Mono+mono derived cells

Full Name: monocyte and monocyte derived cells
Closest Ontology Term: monocyteCL:0000576
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: moMac, moDC, mono
Category Class of which the cell type is a subclass.: mononuclear phagocyteCL:0000113
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD300E, FCN1, RP11-290F20.3, EREG, LILRA5, APOBEC3A, LILRB2, CSTA, VCAN, IFI30
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs for this population compared to rest of UMAP (from Table S1 in publication). No Canonical marker genes as mixed population - further detail of different populations provided in myeloid cell UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual

Main

Cell Metadata

Full Name: monocyte and monocyte derived cells
Closest Ontology Term: monocyteCL:0000576
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: moMac, moDC, mono
Category Class of which the cell type is a subclass.: mononuclear phagocyteCL:0000113
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD300E, FCN1, RP11-290F20.3, EREG, LILRA5, APOBEC3A, LILRB2, CSTA, VCAN, IFI30
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs for this population compared to rest of UMAP (from Table S1 in publication). No Canonical marker genes as mixed population - further detail of different populations provided in myeloid cell UMAP.

Set of Labels Description: Annotation of cells in dataset based on prior knowledge.
Annotation Method: manual