Myeloid cells from human liver dataset

Main

Cell Metadata

Summary

Myeloid cells (40,821) identified in larger dataset of all cells were isolated and reclustered using TotalVI. Corresponds to Figure 4H in publication.

Metadata

Dataset Type: Integrated. The file includes an integrated collection of datasets.
Total Cells: 40,821
organism: Homo sapiens
tissue: liver
assay: 10x 3' v2 (33,111 cells)10x 3' v3 (7,710 cells)
disease: normal
reported_diseases: [colorectal cancer,chronic obstructive pulmonary disease,prostate cancer,squamous cell carcinoma] (22,121 cells)[colorectal cancer,metastatic malignant neoplasm] (11,549 cells)[morbid obesity,hypothyroidism] (1,452 cells)[type 2 diabetes mellitus,abdominal obesity-metabolic syndrome,cystadenocarcinoma,hemorrhoid,hepatocellular carcinoma,Parkinson disease] (1,257 cells)[nasal cavity polyp,cholecystolithiasis,asthma,obesity disorder] (1,093 cells)[meningitis,injury,migraine disorder] (808 cells)[endometriosis,hydrosalpinx,hepatocellular adenoma,vitamin deficiency disorder] (804 cells)[hepatocellular adenoma] (632 cells)[cholecystolithiasis,thyroid tumor,chronic kidney disease,cataract,spinal stenosis,type 2 diabetes mellitus,bursitis,prostatitis] (624 cells)[cataract,cholecystolithiasis,carpal tunnel syndrome] (178 cells)[cholecystolithiasis,idiopathic progressive polyneuropathy,ovarian cyst,pulmonary arterial hypertension,cystic hygroma,congenital diaphragmatic hernia,hemorrhoid,chronic kidney disease,type 2 diabetes mellitus,obstructive sleep apnea syndrome,pituitary gland adenoma] (115 cells)[hyperlipidemia,abscess,urticaria,pulmonary arterial hypertension,acute myocardial infarction,morbid obesity] (95 cells)[Hashimoto thyroiditis,insomnia,gastroesophageal reflux disease,spinal stenosis,morbid obesity,carpal tunnel syndrome] (93 cells)
mapped_reference_annotation: GENCODE 19
typeSample: scRnaSeq (22,526 cells)citeSeq (18,295 cells)
digest: exVivo Collagenase A + DNase
sample: CS41 (6,481 cells)CS44 (5,798 cells)CS43 (5,239 cells)CS42 (4,603 cells)CS34 (3,408 cells)CS112 (1,452 cells)CISE07 (1,354 cells)CISE06 (1,297 cells)CISE09 (1,250 cells)CISE08 (1,184 cells)CS126 (1,093 cells)CS109 (890 cells)CS87 (824 cells)CS32 (824 cells)CS46 (804 cells)CS33 (754 cells)CS110 (656 cells)CS85 (654 cells)CS101 (632 cells)CS81 (624 cells)CS108 (367 cells)CS83 (178 cells)CS111 (152 cells)CS71 (95 cells)CS73 (93 cells)CS37 (58 cells)CS38 (57 cells)
tissue_type: Liver
donor_id: H06 (22,121 cells)H02 (10,071 cells)H16 (1,478 cells)H23 (1,452 cells)H21 (1,257 cells)H25 (1,093 cells)H22 (808 cells)H07 (804 cells)H18 (632 cells)H13 (624 cells)H14 (178 cells)H04 (115 cells)H10 (95 cells)H11 (93 cells)
sex: male (32,911 cells)female (7,910 cells)

Cell Labels

19,112

7,842

3,849

3,442

2,264

1,732

1,196

761

531

Myeloid cells from human liver dataset

Main

Summary

Feedback

Cell Metadata

author_cell_type

Summary

Myeloid cells (40,821) identified in larger dataset of all cells were isolated and reclustered using TotalVI. Corresponds to Figure 4H in publication.

Metadata

Dataset Type: Integrated. The file includes an integrated collection of datasets.
Total Cells: 40,821
organism: Homo sapiens
tissue: liver
assay: 10x 3' v2 (33,111 cells)10x 3' v3 (7,710 cells)
disease: normal
reported_diseases: [colorectal cancer,chronic obstructive pulmonary disease,prostate cancer,squamous cell carcinoma] (22,121 cells)[colorectal cancer,metastatic malignant neoplasm] (11,549 cells)[morbid obesity,hypothyroidism] (1,452 cells)[type 2 diabetes mellitus,abdominal obesity-metabolic syndrome,cystadenocarcinoma,hemorrhoid,hepatocellular carcinoma,Parkinson disease] (1,257 cells)[nasal cavity polyp,cholecystolithiasis,asthma,obesity disorder] (1,093 cells)[meningitis,injury,migraine disorder] (808 cells)[endometriosis,hydrosalpinx,hepatocellular adenoma,vitamin deficiency disorder] (804 cells)[hepatocellular adenoma] (632 cells)[cholecystolithiasis,thyroid tumor,chronic kidney disease,cataract,spinal stenosis,type 2 diabetes mellitus,bursitis,prostatitis] (624 cells)[cataract,cholecystolithiasis,carpal tunnel syndrome] (178 cells)[cholecystolithiasis,idiopathic progressive polyneuropathy,ovarian cyst,pulmonary arterial hypertension,cystic hygroma,congenital diaphragmatic hernia,hemorrhoid,chronic kidney disease,type 2 diabetes mellitus,obstructive sleep apnea syndrome,pituitary gland adenoma] (115 cells)[hyperlipidemia,abscess,urticaria,pulmonary arterial hypertension,acute myocardial infarction,morbid obesity] (95 cells)[Hashimoto thyroiditis,insomnia,gastroesophageal reflux disease,spinal stenosis,morbid obesity,carpal tunnel syndrome] (93 cells)
mapped_reference_annotation: GENCODE 19
typeSample: scRnaSeq (22,526 cells)citeSeq (18,295 cells)
digest: exVivo Collagenase A + DNase
sample: CS41 (6,481 cells)CS44 (5,798 cells)CS43 (5,239 cells)CS42 (4,603 cells)CS34 (3,408 cells)CS112 (1,452 cells)CISE07 (1,354 cells)CISE06 (1,297 cells)CISE09 (1,250 cells)CISE08 (1,184 cells)CS126 (1,093 cells)CS109 (890 cells)CS87 (824 cells)CS32 (824 cells)CS46 (804 cells)CS33 (754 cells)CS110 (656 cells)CS85 (654 cells)CS101 (632 cells)CS81 (624 cells)CS108 (367 cells)CS83 (178 cells)CS111 (152 cells)CS71 (95 cells)CS73 (93 cells)CS37 (58 cells)CS38 (57 cells)
tissue_type: Liver
donor_id: H06 (22,121 cells)H02 (10,071 cells)H16 (1,478 cells)H23 (1,452 cells)H21 (1,257 cells)H25 (1,093 cells)H22 (808 cells)H07 (804 cells)H18 (632 cells)H13 (624 cells)H14 (178 cells)H04 (115 cells)H10 (95 cells)H11 (93 cells)
sex: male (32,911 cells)female (7,910 cells)

Cell Labels

19,112

7,842

3,849

3,442

2,264

1,732

1,196

761

531