Myeloid cells from human liver dataset

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Cell Metadata

Pat Mono

Ontology Term: non-classical monocyteCL:0000875
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: Patrolling monocyte, CD16+ monocyte
Category Class of which the cell type is a subclass.: monocyteCL:0000576
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LYPD2, CDKN1C, CKB, PTP4A3, CD79B, HES4, PPM1N, SYTL1, FCGR3A, LILRA3
Canonical Marker Genes: SPN, FCGR3A
Rationale: The marker genes are the top 10 DEGs for this population compared with others in the UMAP (from Table S2 in publication). SPN and FCGR3A are canonical genes used in both human and mouse.

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Ontology Term: non-classical monocyteCL:0000875
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: Patrolling monocyte, CD16+ monocyte
Category Class of which the cell type is a subclass.: monocyteCL:0000576
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LYPD2, CDKN1C, CKB, PTP4A3, CD79B, HES4, PPM1N, SYTL1, FCGR3A, LILRA3
Canonical Marker Genes: SPN, FCGR3A
Rationale: The marker genes are the top 10 DEGs for this population compared with others in the UMAP (from Table S2 in publication). SPN and FCGR3A are canonical genes used in both human and mouse.

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual