Myeloid cells from human liver dataset

Main

Cell Metadata

Mac1

Ontology Term: macrophageCL:0000235
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: mononuclear phagocyteCL:0000113
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: IGSF21, FCGBP, USP53, ID3, C1QC, A2M, SBDS, PLTP, MRC1, SLCO2B1
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs for this population compared with other cell types in the UMAP (from Table S2 in publication). This population has not been described before and shares genes with macrophages and DC3s thus the true definition of this cell remains a question.

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Ontology Term: macrophageCL:0000235
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: mononuclear phagocyteCL:0000113
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: IGSF21, FCGBP, USP53, ID3, C1QC, A2M, SBDS, PLTP, MRC1, SLCO2B1
Canonical Marker Genes: unknown
Rationale: Marker genes are top 10 DEGs for this population compared with other cell types in the UMAP (from Table S2 in publication). This population has not been described before and shares genes with macrophages and DC3s thus the true definition of this cell remains a question.

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual