Myeloid cells from human liver dataset

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Cell Metadata

Mig cDCs

Full Name: Migratory Dendritic cell
Closest Ontology Term: liver dendritic cellCL:2000055
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: CCR7+ Dendritic cell, Mig. cDC
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LAD1, CCR7, LAMP3, CCL19, CCL22, IL7R, SLC7A11, FSCN1, RAMP1, IDO1
Canonical Marker Genes: CCR7, FLT3, CCL19, CCL21
Rationale: Marker genes are top 10 DEGs for this population compared with others in UMAP (from Table S2 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Full Name: Migratory Dendritic cell
Closest Ontology Term: liver dendritic cellCL:2000055
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: CCR7+ Dendritic cell, Mig. cDC
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LAD1, CCR7, LAMP3, CCL19, CCL22, IL7R, SLC7A11, FSCN1, RAMP1, IDO1
Canonical Marker Genes: CCR7, FLT3, CCL19, CCL21
Rationale: Marker genes are top 10 DEGs for this population compared with others in UMAP (from Table S2 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual