Myeloid cells from human liver dataset

immature LAMs

Ontology Term

lipid-associated macrophageCL:4033086

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

TREM2+ macrophages

Category

Class of which the cell type is a subclass.

macrophageCL:0000235

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

FN1, CST6, SPP1, MT1G, TREM2, GPNMB, SLC16A10, CD9, EMP1, APOC1

Canonical Marker Genes

CD9, TREM2, GPNMB, SPP1, FABP5

Rationale

Marker genes are top 10 DEGs for this population compared with others in the UMAP (from Table S2 in publication).

Inherited from author_cell_type

Set of Labels Description

Annotation of cell types in dataset based on prior knowledge

Annotation Method

manual