Myeloid cells from human liver dataset

Main

Cell Metadata

Mono

Ontology Term: classical monocyteCL:0000860
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: inflammatory monocyte
Category Class of which the cell type is a subclass.: monocyteCL:0000576
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: S100A8, S100A12, S100A9, VCAN, FCAR, THBS1, EREG, MGST1, RP11-1143G9.4, ASGR1
Canonical Marker Genes: VCAN, FCN1, LYZ, SELL, CD14
Rationale: The marker genes are the top 10 DEGs for this cell population compared with the others (from Table S2 in publication). Canonical marker genes are used throughout literature.

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Ontology Term: classical monocyteCL:0000860
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: inflammatory monocyte
Category Class of which the cell type is a subclass.: monocyteCL:0000576
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: S100A8, S100A12, S100A9, VCAN, FCAR, THBS1, EREG, MGST1, RP11-1143G9.4, ASGR1
Canonical Marker Genes: VCAN, FCN1, LYZ, SELL, CD14
Rationale: The marker genes are the top 10 DEGs for this cell population compared with the others (from Table S2 in publication). Canonical marker genes are used throughout literature.

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual