Myeloid cells from human liver dataset

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Cell Metadata

cDC1s

Ontology Term: conventional dendritic cellCL:0000990
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: DC1, Type 1 Conventional dendritic cell
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: XCR1, CLNK, TACSTD2, CLEC9A, EGLN3, IDO1, DNASE1L3, CADM1, S100B, RUBCNL
Canonical Marker Genes: XCR1, IRF8, CLEC9A, FLT3
Rationale: Marker genes are top 10 DEGs for this population compared with others in UMAP (from Table S2 in publication). Canonical marker genes routinely used to identify cDC1s across species.

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Ontology Term: conventional dendritic cellCL:0000990
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: DC1, Type 1 Conventional dendritic cell
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: XCR1, CLNK, TACSTD2, CLEC9A, EGLN3, IDO1, DNASE1L3, CADM1, S100B, RUBCNL
Canonical Marker Genes: XCR1, IRF8, CLEC9A, FLT3
Rationale: Marker genes are top 10 DEGs for this population compared with others in UMAP (from Table S2 in publication). Canonical marker genes routinely used to identify cDC1s across species.

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual