Cell Annotation Platform

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An atlas of healthy and injured cell states and niches in the human kidney (Version 1.5)
Single-nucleus RNA-seq of the Adult Human Kidney (Version 1.5)

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An effort by the Villani, Kharchenko, Gehlenborg, Theis, Marioni, and Regev labs.

Single-nucleus RNA-seq of the Adult Human Kidney (Version 1.5)

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Cell Metadata

Summary

The single-nucleus RNA-seq dataset from Lake et al. (2023) Nature.

Metadata

Dataset Type: Integrated. The file includes an integrated collection of datasets.
Total Cells: 304,989
organism: Homo sapiens
tissue: cortex of kidney (201,734 cells)renal medulla (84,948 cells)renal papilla (17,958 cells)kidney (349 cells)
assay: 10x 3' v3
disease: chronic kidney disease (127,996 cells)normal (122,444 cells)acute kidney failure (54,549 cells)

Cell Labels

subclass.l2 plot preview

28,396

21,812

19,237

18,851

13,126

12,731

11,851

10,231

9,852

8,822

8,375

8,080

7,567

7,397

6,043

5,862

5,830

5,801

5,364

5,277

5,060

4,994

4,679

4,614

4,611

4,029

3,889

3,292

3,273

2,986

2,943

2,651

2,581

2,543

2,480

2,283

2,112

1,836

1,770

1,723

1,616

1,489

1,414

1,291

1,228

1,181

1,145

982

901

757

705

644

635

618

558

534

530

526

499

370

312

279

264

232

223

163

154

143

134

134

123

111

83

70

69

15

3

subclass.l1 plot preview

87,599

57,175

27,552

23,878

21,769

17,717

13,830

12,474

11,953

11,036

6,476

6,388

3,403

3,273

312

154