CD45- structural cells/nuclei (15,481) were identified in larger dataset of all cells, isolated and reclustered with scVI. Corresponds to Figure 5A in publication.
- Dataset Type
- Integrated. The file includes an integrated collection of datasets.
- Total Cells
- 15,481
- organism
- Homo sapiens
- tissue
- liver
- assay
- 10x 3' v3 (15,020 cells)10x 3' v2 (461 cells)
- disease
- normal
- reported_diseases
- [cholecystolithiasis,obesity disorder] (7,699 cells)[type 2 diabetes mellitus,obstructive sleep apnea syndrome,obesity disorder,hypertensive disorder,depressive disorder,coronary artery disorder] (5,212 cells)[cholelithiasis,obesity disorder] (1,322 cells)[meningitis,injury,migraine disorder] (307 cells)[metastatic malignant neoplasm,colorectal cancer] (288 cells)[nasal cavity polyp,cholecystolithiasis,asthma,obesity disorder] (262 cells)[hepatocellular adenoma,endometriosis,vitamin deficiency disorder,hydrosalpinx] (130 cells)[chronic obstructive pulmonary disease,prostate cancer,colorectal cancer,squamous cell carcinoma] (113 cells)[hypothyroidism,morbid obesity] (42 cells)[type 1 diabetes mellitus,abscess] (41 cells)[Parkinson disease,type 2 diabetes mellitus,abdominal obesity-metabolic syndrome,hepatocellular carcinoma,cystadenocarcinoma,hemorrhoid] (31 cells)[hepatocellular adenoma] (21 cells)[cataract,cholecystolithiasis,carpal tunnel syndrome] (8 cells)[obesity disorder] (5 cells)
- mapped_reference_annotation
- GENCODE 19
- typeSample
- nucSeq (10,513 cells)scRnaSeq (4,869 cells)citeSeq (99 cells)
- digest
- nuclei (10,513 cells)exVivo Collagenase A and DNase (4,968 cells)
- sample
- CS170 (3,933 cells)CS171 (3,766 cells)CS167 (2,294 cells)CS166 (2,260 cells)CS161 (721 cells)CS169 (658 cells)CS162 (601 cells)CS111 (245 cells)CS127 (245 cells)CS31 (218 cells)CS46 (130 cells)CS110 (62 cells)CS85 (53 cells)CS112 (42 cells)ABU8 (41 cells)CS43 (40 cells)CS41 (27 cells)CS42 (25 cells)CS109 (24 cells)CS44 (21 cells)CS101 (21 cells)CS87 (17 cells)CS126 (17 cells)CS83 (8 cells)CS108 (7 cells)CS164 (5 cells)
- tissue_type
- Liver
- donor_id
- H38 (7,699 cells)H37 (5,212 cells)H30 (1,322 cells)H22 (307 cells)H25 (262 cells)H02 (218 cells)H07 (130 cells)H06 (113 cells)H16 (70 cells)H23 (42 cells)H33 (41 cells)H21 (31 cells)H18 (21 cells)H14 (8 cells)H32 (5 cells)
- sex
- female (9,892 cells)male (5,589 cells)
