CD45 negative cells from human liver dataset

Main

Cell Metadata

Hepatocytes

Ontology Term: hepatocyteCL:0000182
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BAAT, CYP2E1, CYP3A4, CP, CUX2, CYP3A5, ACSL1, ERRFI1, SBDS, HAL
Canonical Marker Genes: ALB, TTR
Rationale: The marker genes provided are the top 10 DEGs for this cluster (from Table S3 from the publication). On the basis of these genes, other top DEGs and expression of ALB and TTR we annotated these cells as hepatocytes. They can be further subdivided into portal and central hepatocytes.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: hepatocyteCL:0000182
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: epithelial cellCL:0000066
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: BAAT, CYP2E1, CYP3A4, CP, CUX2, CYP3A5, ACSL1, ERRFI1, SBDS, HAL
Canonical Marker Genes: ALB, TTR
Rationale: The marker genes provided are the top 10 DEGs for this cluster (from Table S3 from the publication). On the basis of these genes, other top DEGs and expression of ALB and TTR we annotated these cells as hepatocytes. They can be further subdivided into portal and central hepatocytes.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual