CD45 negative cells from human liver dataset

Hepatocytes

Ontology Term

hepatocyteCL:0000182

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

unknown

Category

Class of which the cell type is a subclass.

epithelial cellCL:0000066

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

BAAT, CYP2E1, CYP3A4, CP, CUX2, CYP3A5, ACSL1, ERRFI1, SBDS, HAL

Canonical Marker Genes

ALB, TTR

Rationale

The marker genes provided are the top 10 DEGs for this cluster (from Table S3 from the publication). On the basis of these genes, other top DEGs and expression of ALB and TTR we annotated these cells as hepatocytes. They can be further subdivided into portal and central hepatocytes.

Inherited from author_cell_type

Set of Labels Description

Annotation of cell types included in dataset based on prior knowledge.

Annotation Method

manual