Cell Annotation Platform
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Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
CD45 negative cells from human liver dataset
CD45 negative cells from human liver dataset
Main
Summary
Feedback Received
Cell Metadata
author_cell_type
VSMCs
Ontology Term
vascular associated smooth muscle cell
CL:0000359
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
unknown
Category
Class of which the cell type is a subclass.
smooth muscle cell
CL:0000192
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
MYH11
,
IRAG1
,
ATP1B3
,
TPM2
,
MYL9
,
SPARCL1
,
ACTA2
,
NR4A3
,
SOD3
,
LMOD1
Canonical Marker Genes
MYL9
Rationale
Marker genes are top 10 DEGs for this cell population compared with others in this UMAP (from Table S3 in publication).
Inherited from author_cell_type
Set of Labels Description
Annotation of cell types included in dataset based on prior knowledge.
Annotation Method
manual
Molecular Data
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