Cell Annotation Platform
v1
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
CD45 negative cells from human liver dataset
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CD45 negative cells from human liver dataset
Main
Summary
Feedback Received
Cell Metadata
author_cell_type
VSMCs
Ontology Term
vascular associated smooth muscle cell
CL:0000359
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
unknown
Category
Class of which the cell type is a subclass.
smooth muscle cell
CL:0000192
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
MYH11
,
IRAG1
,
ATP1B3
,
TPM2
,
MYL9
,
SPARCL1
,
ACTA2
,
NR4A3
,
SOD3
,
LMOD1
Canonical Marker Genes
MYL9
Rationale
Marker genes are top 10 DEGs for this cell population compared with others in this UMAP (from Table S3 in publication).
Inherited from author_cell_type
Set of Labels Description
Annotation of cell types included in dataset based on prior knowledge.
Annotation Method
manual
Molecular Data
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