CD45 negative cells from human liver dataset

Cholangiocytes

Ontology Term: cholangiocyteCL:1000488
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: branched duct epithelial cellCL:0000069
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CHST4, KCNJ16, FXYD2, SFRP5, KCNJ15, SLC5A1, EHF, KRT7, SCGN, DCDC2
Canonical Marker Genes: DCDC2, BICC1
Negative Marker Genes Genes expected to be absent, or expressed at a notably low level, in these cells, and whose absence supports the assignment of this cell annotation.: —
Rationale: The marker genes are the top 10 DEGs for this population compared with other cell types in UMAP (from Table S3 in publication).

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual