Cell Annotation Platform
v1
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
CD45 negative cells from human liver dataset
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CD45 negative cells from human liver dataset
Main
Summary
Feedback Received
Cell Metadata
author_cell_type
Cholangiocytes
Ontology Term
cholangiocyte
CL:1000488
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.
unknown
Category
Class of which the cell type is a subclass.
branched duct epithelial cell
CL:0000069
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.
—
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.
CHST4
,
KCNJ16
,
FXYD2
,
SFRP5
,
KCNJ15
,
SLC5A1
,
EHF
,
KRT7
,
SCGN
,
DCDC2
Canonical Marker Genes
DCDC2
,
BICC1
Rationale
The marker genes are the top 10 DEGs for this population compared with other cell types in UMAP (from Table S3 in publication).
Inherited from author_cell_type
Set of Labels Description
Annotation of cell types included in dataset based on prior knowledge.
Annotation Method
manual
Molecular Data
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