CD45 negative cells from human liver dataset

Main

Cell Metadata

Fibroblasts

Ontology Term: fibroblastCL:0000057
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: stromal cellCL:0000499
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: HILPDA, COL1A1, COL1A2, LGALS1, MMP2, COL3A1, DCN, CCN2, NBL1, VIM
Canonical Marker Genes: COL1A1, COL1A2
Rationale: The marker genes are the top 10 DEGs for this cell population compared with the rest (from Table S3 in publication).

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: fibroblastCL:0000057
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: stromal cellCL:0000499
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: HILPDA, COL1A1, COL1A2, LGALS1, MMP2, COL3A1, DCN, CCN2, NBL1, VIM
Canonical Marker Genes: COL1A1, COL1A2
Rationale: The marker genes are the top 10 DEGs for this cell population compared with the rest (from Table S3 in publication).

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual