CD45 negative cells from human liver dataset

Main

Cell Metadata

Stellate cells

Ontology Term: hepatic stellate cellCL:0000632
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: ITO cell
Category Class of which the cell type is a subclass.: fibroblastCL:0000057
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LHX2, HHIP, CCBE1, HGF, LAMA2, CARMN, PAMR1, RP11-383H13.1, HAND2-AS1, PLA2G5
Canonical Marker Genes: DCN, COL1A2, COL5A1, COL3A1
Rationale: The marker genes are the top 10 DEGs for these cells compared with other cells in the UMAP (from Table S3 in publication). Other canonical marker genes used include DCN and various collagen genes.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual

Main

Cell Metadata

Ontology Term: hepatic stellate cellCL:0000632
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: ITO cell
Category Class of which the cell type is a subclass.: fibroblastCL:0000057
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: LHX2, HHIP, CCBE1, HGF, LAMA2, CARMN, PAMR1, RP11-383H13.1, HAND2-AS1, PLA2G5
Canonical Marker Genes: DCN, COL1A2, COL5A1, COL3A1
Rationale: The marker genes are the top 10 DEGs for these cells compared with other cells in the UMAP (from Table S3 in publication). Other canonical marker genes used include DCN and various collagen genes.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual