CD45 negative cells from human liver dataset

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Cell Metadata

Portal Vein Endothelial cells

Ontology Term: endothelial cell of hepatic portal veinCL:0009094
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: vein endothelial cellCL:0002543
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MECOM, SLCO2A1, MGP, CD34, ST8SIA6, CLEC14A, FLRT2, COL8A1, SPARCL1, PODXL
Canonical Marker Genes: VWF, DLL4, NRG3
Rationale: The marker genes are the top 10 DEGs between this population and the others in the UMAP (from Table S3 in publication). Other key genes were VWF, DLL4 and NRG3.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual

Ontology Term: endothelial cell of hepatic portal veinCL:0009094
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: vein endothelial cellCL:0002543
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MECOM, SLCO2A1, MGP, CD34, ST8SIA6, CLEC14A, FLRT2, COL8A1, SPARCL1, PODXL
Canonical Marker Genes: VWF, DLL4, NRG3
Rationale: The marker genes are the top 10 DEGs between this population and the others in the UMAP (from Table S3 in publication). Other key genes were VWF, DLL4 and NRG3.

Set of Labels Description: Annotation of cell types included in dataset based on prior knowledge.
Annotation Method: manual