Epithelial cells of the ileum are marked by keratins and S100G, a marker of the villus. In this dataset, we only mark epithelial stem cells, proliferating epithelial cells, and the rest of the epithelial cells as individual groups.
Inherited from celltype
Set of Labels Description
In this paper we used an automated iterative subclustering algorithm to find hundreds of cell state clusters, after which we merged unsupported clusters and annotated each resulting cluster with a better-known cell subtype. The high-res cell state clusters are annotated as subtype.gene1.gene2, so in some cases we didn't directly name some commonly named subtypes, such as pericytes. When we run DE on the resulting subtypes, we find many canonical and scRNA-suggested marker genes.
