This one has high AIF1, CD14, LYZ, FTL, all of which can be in macrophages. or monocytes. It is often difficult to discern macrophage from monocyte in gut data, but this one has higher CD14 as well as FCN1 and S100A8/9, so we went with monocyte
Inherited from celltype
Set of Labels Description
In this paper we used an automated iterative subclustering algorithm to find hundreds of cell state clusters, after which we merged unsupported clusters and annotated each resulting cluster with a better-known cell subtype. The high-res cell state clusters are annotated as subtype.gene1.gene2, so in some cases we didn't directly name some commonly named subtypes, such as pericytes. When we run DE on the resulting subtypes, we find many canonical and scRNA-suggested marker genes.
