Cell Annotation
Platform

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snRNA-seq of human retina - all cells

Main

Cell Metadata

Ontology Term: GABAergic amacrine cellCL:4030027
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: amacrine cell, GABAergic
Category Class of which the cell type is a subclass.: amacrine cellCL:0000561
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: ID4, COL4A2, DAPL1, HS3ST4, TAC1, FOXP2, STK32B, MCTP1, AC019068.1, RNF220
Canonical Marker Genes: unknown
Rationale: 69.7%Gaba4+28.3%Unassigned of the Sanes dataset; 98.7%Ga6 of the macaque dataset; 99.7%Unassigned of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual