snRNA-seq of human retina - all cells

Main

Cell Metadata

HAC46

Ontology Term: GABAergic amacrine cellCL:4030027
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: amacrine cell, GABAergic
Category Class of which the cell type is a subclass.: amacrine cellCL:0000561
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FAM178B, DEPTOR, SCGN, SMOC2, NXPH1, TSHZ3, ITPR2, CSGALNACT1, TAFA4, TAFA1
Canonical Marker Genes: unknown
Rationale: 49.5%Unassigned+27.8%Gaba14+22.8%Gaba13 of the Sanes dataset; 53.9%Gl8+46.1%Unassigned of the macaque dataset; 99.6%AC36 of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual

Main

Cell Metadata

Ontology Term: GABAergic amacrine cellCL:4030027
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: amacrine cell, GABAergic
Category Class of which the cell type is a subclass.: amacrine cellCL:0000561
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FAM178B, DEPTOR, SCGN, SMOC2, NXPH1, TSHZ3, ITPR2, CSGALNACT1, TAFA4, TAFA1
Canonical Marker Genes: unknown
Rationale: 49.5%Unassigned+27.8%Gaba14+22.8%Gaba13 of the Sanes dataset; 53.9%Gl8+46.1%Unassigned of the macaque dataset; 99.6%AC36 of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual