snRNA-seq of human retina - all cells

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Cell Metadata

HAC87

Ontology Term: GABAergic amacrine cellCL:4030027
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: amacrine cell, GABAergic
Category Class of which the cell type is a subclass.: amacrine cellCL:0000561
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: TRPM1, NPR3, SLC22A3, CRYBG3, ADAMTSL1, GABRA5, AC073114.1, NETO1, SAMSN1, DGKB
Canonical Marker Genes: unknown
Rationale: 50.0%Gaba11+48.9%Unassigned of the Sanes dataset; 82.2%Unassigned+15.6%Ga5 of the macaque dataset; 68.9%Unassigned+27.8%AC49 of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual

Ontology Term: GABAergic amacrine cellCL:4030027
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: amacrine cell, GABAergic
Category Class of which the cell type is a subclass.: amacrine cellCL:0000561
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: TRPM1, NPR3, SLC22A3, CRYBG3, ADAMTSL1, GABRA5, AC073114.1, NETO1, SAMSN1, DGKB
Canonical Marker Genes: unknown
Rationale: 50.0%Gaba11+48.9%Unassigned of the Sanes dataset; 82.2%Unassigned+15.6%Ga5 of the macaque dataset; 68.9%Unassigned+27.8%AC49 of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual