Single Cell Atlas of Human Ocular Surface scRNA-seq: Cornea, Limbus, Sclera

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Cell Metadata

Corneal Endothelium

Ontology Term: corneal endothelial cellCL:0000132
SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.: unknown
CategoryClass of which the cell type is a subclass.: endothelial cellCL:0000115
Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.: POU6F2, MARCH3, COL4A3, CA12, CCDC144A, ALCAM, NRXN3, COL8A1, KIF26B, MSI2
Canonical Marker Genes: POU6F2, SLC4A11
Rationale: from cornea endothelium samples of Dickman dataset; by marker gene POU6F2, SLC4A11

Set of Labels Description: This atlas is an integrated collection of over 815k cells, derived from single-cell RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 31 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual

Ontology Term: corneal endothelial cellCL:0000132
SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.: unknown
CategoryClass of which the cell type is a subclass.: endothelial cellCL:0000115
Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.: POU6F2, MARCH3, COL4A3, CA12, CCDC144A, ALCAM, NRXN3, COL8A1, KIF26B, MSI2
Canonical Marker Genes: POU6F2, SLC4A11
Rationale: from cornea endothelium samples of Dickman dataset; by marker gene POU6F2, SLC4A11

Set of Labels Description: This atlas is an integrated collection of over 815k cells, derived from single-cell RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 31 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual