Single Cell Atlas of Human Ocular Surface snRNA-seq: Cornea, Limbus, Sclera

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Cell Metadata

Corneal_Superficial_Epi

Ontology Term: corneal epithelial cellCL:0000575
SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.: epithelial cell of cornea
CategoryClass of which the cell type is a subclass.: general ecto-epithelial cellCL:0002159
Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.: MUC16, MACC1, BCAS1, HOPX, SCEL, ADGRF1, LMO7, FAM3D, MUC20, XDH
Canonical Marker Genes: unknown
Rationale: 30.3% K_Epi-Superficial from Sanes dataset; majorclass annotated by PAX6, different from Epi-TDC, low expression of KRT12, high expression of KRT24

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual

Ontology Term: corneal epithelial cellCL:0000575
SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.: epithelial cell of cornea
CategoryClass of which the cell type is a subclass.: general ecto-epithelial cellCL:0002159
Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.: MUC16, MACC1, BCAS1, HOPX, SCEL, ADGRF1, LMO7, FAM3D, MUC20, XDH
Canonical Marker Genes: unknown
Rationale: 30.3% K_Epi-Superficial from Sanes dataset; majorclass annotated by PAX6, different from Epi-TDC, low expression of KRT12, high expression of KRT24

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual