Human PBMC atlas - T CD8 naive cells

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Cell Metadata

T CD8 EM activ NR4A2

Full Name: NR4A2+ effector memory CD8-positive, alpha-beta T cell
Closest Ontology Term: effector memory CD8-positive, alpha-beta T cellCL:0000913
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: effector memory CD8-positive, alpha-beta T cellCL:0000913
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: Cluster with canonical effector memory markers in addition to HLA genes
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NR4A2
Canonical Marker Genes: CD8, CCL5, GZMK
Rationale: Cluster with canonical effector memory markers in addition to HLA genes
Rationale DOI: https://doi.org/10.1016/j.coi.2023.102285

Set of Labels Description: Clustering was Leiden based before manual annotation and consensus agreement by multiple authors.
Annotation Method: manual

Full Name: NR4A2+ effector memory CD8-positive, alpha-beta T cell
Closest Ontology Term: effector memory CD8-positive, alpha-beta T cellCL:0000913
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: effector memory CD8-positive, alpha-beta T cellCL:0000913
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: Cluster with canonical effector memory markers in addition to HLA genes
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: NR4A2
Canonical Marker Genes: CD8, CCL5, GZMK
Rationale: Cluster with canonical effector memory markers in addition to HLA genes
Rationale DOI: https://doi.org/10.1016/j.coi.2023.102285

Set of Labels Description: Clustering was Leiden based before manual annotation and consensus agreement by multiple authors.
Annotation Method: manual