NKT Cells
Synonyms
Terms that have the same, or nearly the same, meaning as the selected cell type.- NKT cell
Category
Class of which the cell type is a subclass.- Unconventional T cell
Ontology Assessment
Disagreements with any aspect of the Cell Ontology.- unconventional T cell category would be useful to encapsulate non-CD8/CD4 t cell subclasses. https://doi.org/10.1038/ni.3298
Marker Gene Evidence
Gene markers used by researcher to assign this cell annotation.- FCER1G, HOPX, TRAV24
Rationale
- ZBTB16 expressing, CD7, JUND, NKG7, these could be NK T cells - but not sure of TCR expression
Inherited from hgca_celltype_v1
- Set of Labels Description
- Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.
- Annotation Method
- both
- Algorithm Name
- scIB
- Algorithm Version
- 1.2.1
- Algorithm URL
- https://github.com/theislab/scib
