Human Gut Cell Atlas (HGCA) v1 - Lymphoid Lineage

CD8 Circulating Effector Memory

Ontology Term: effector memory CD8-positive, alpha-beta T cellCL:0000913
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: effector memory CD8 T cell (circulating), Teff/mem(circulating)
Category Class of which the cell type is a subclass.: CD8-positive, alpha-beta T cellCL:0000625
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FGFBP2, CX3CR1, GZMH, GZMK
Canonical Marker Genes: CX3CR1, GZMH, KLRG1
Rationale: KLRG1, FGFBP2, CX3CR1, GZMH expressing set of clusters found across tissue sections

Set of Labels Description: Cell annotations based on two rounds of subclustering with scVI integration, sample_id as batch key. Cell annotations were refined by expert feedback based on "prelim annotation" on CAP. Prelim annotation is renamed "hgca_celltype_v0" here and the feedback on the "prelim annotation" is available by selecting a previous version of the Integrated Human Gut Atlas on CAP.
Annotation Method: both
Algorithm Name: scIB
Algorithm Version: 1.2.1
Algorithm URL: https://github.com/theislab/scib