snRNA-seq of human retina - retinal ganglion cell subset

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Cell Metadata

ipRGC

Ontology Term: retinal ganglion cellCL:0000740
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: retinal cellCL:0009004
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AL445433.2, CAMK2A, CDH6, CHL1, CPA6, CPNE8, DMD, KIAA1217, KIRREL3, NDST4, OPRM1, PLPPR5, PPFIBP1, RASGRP1, TGFA, TMEFF2
Canonical Marker Genes: OPN4
Rationale: 84.7%hRGC5+12.5%Unassigned of the Sanes dataset; 99.2%RGC6 of the Shekhar dataset; 93.6%RGC8 of the macaque dataset; 77.0%8_Novel of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: A total of 11 retinal ganglion cell clusters were identified from over 399K retinal ganglion cell nuclei in the current atlas. Utilizing previously characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual

Ontology Term: retinal ganglion cellCL:0000740
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: retinal cellCL:0009004
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AL445433.2, CAMK2A, CDH6, CHL1, CPA6, CPNE8, DMD, KIAA1217, KIRREL3, NDST4, OPRM1, PLPPR5, PPFIBP1, RASGRP1, TGFA, TMEFF2
Canonical Marker Genes: OPN4
Rationale: 84.7%hRGC5+12.5%Unassigned of the Sanes dataset; 99.2%RGC6 of the Shekhar dataset; 93.6%RGC8 of the macaque dataset; 77.0%8_Novel of the mouse dataset; Known markers are curated from human, macaque, and mouse markers.

Set of Labels Description: A total of 11 retinal ganglion cell clusters were identified from over 399K retinal ganglion cell nuclei in the current atlas. Utilizing previously characterized markers from macaque, 5 clusters can be annotated.
Annotation Method: manual