Single Cell Atlas of Human Ocular Surface scRNA-seq: Cornea, Limbus, Sclera

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Cell Metadata

Conj-Epi

Ontology Term: conjunctival epithelial cellCL:1000432
SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.: epithelial cell of conjunctiva
CategoryClass of which the cell type is a subclass.: epithelial cellCL:0000066
Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.: KRT19, KRT13, AQP3, SLPI, UPK3BL1, HOPX, S100A9, CXCL17, ELF3, AQP5
Canonical Marker Genes: KRT13
Rationale: 87% conjunctival basal epithelium+97.3% conjunctival superficial epithelium from Lako adult dataset; 66.6% conjunctival epithelium from Lako fetal dataset; 57.7% Conj from Chen dataset; majorclass annotated by KRT5

Set of Labels Description: This atlas is an integrated collection of over 815k cells, derived from single-cell RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 31 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual

Ontology Term: conjunctival epithelial cellCL:1000432
SynonymsTerms that have the same, or nearly the same, meaning as the selected cell type.: epithelial cell of conjunctiva
CategoryClass of which the cell type is a subclass.: epithelial cellCL:0000066
Marker Gene EvidenceGene markers used by researcher to assign this cell annotation.: KRT19, KRT13, AQP3, SLPI, UPK3BL1, HOPX, S100A9, CXCL17, ELF3, AQP5
Canonical Marker Genes: KRT13
Rationale: 87% conjunctival basal epithelium+97.3% conjunctival superficial epithelium from Lako adult dataset; 66.6% conjunctival epithelium from Lako fetal dataset; 57.7% Conj from Chen dataset; majorclass annotated by KRT5

Set of Labels Description: This atlas is an integrated collection of over 815k cells, derived from single-cell RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 31 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual