Single Cell Atlas of Human Ocular Surface snRNA-seq: Cornea, Limbus, Sclera

Main

Cell Metadata

LPC

Ontology Term: progenitor cellCL:0011026
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: precursor cellCL:0011115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: KRT15, ANK3, ARHGAP24, SLC6A6, RPLP1, RPL13, NTNG1, EEF1A1, TXNIP, CCSER1
Canonical Marker Genes: KRT15
Rationale: 99.6% Conj_Epi-Basal+47.8% Conj_Epi-Wing+97.7% Limbal_Epi-Basal from Sanes datasets; majorclass annotated by PAX6, celltype annotated by KRT15

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual

Ontology Term: progenitor cellCL:0011026
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: precursor cellCL:0011115
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: KRT15, ANK3, ARHGAP24, SLC6A6, RPLP1, RPL13, NTNG1, EEF1A1, TXNIP, CCSER1
Canonical Marker Genes: KRT15
Rationale: 99.6% Conj_Epi-Basal+47.8% Conj_Epi-Wing+97.7% Limbal_Epi-Basal from Sanes datasets; majorclass annotated by PAX6, celltype annotated by KRT15

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual