Single Cell Atlas of Human Ocular Surface snRNA-seq: Cornea, Limbus, Sclera

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Cell Metadata

Uveal/TM Fibroblasts

Ontology Term: fibroblastCL:0000057
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: connective tissue cellCL:0002320
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: TRPM1, AFF3, PMEL, TYR, PAX3, STK32A, BCL2, ABCB5, SGCD, DLC1
Canonical Marker Genes: DCN, BMP5, EYA1
Rationale: 40% FibroX+93.8% Uveal_Fibro from Sanes datasets; majorclass annotated by DCN

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual

Ontology Term: fibroblastCL:0000057
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: unknown
Category Class of which the cell type is a subclass.: connective tissue cellCL:0002320
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: TRPM1, AFF3, PMEL, TYR, PAX3, STK32A, BCL2, ABCB5, SGCD, DLC1
Canonical Marker Genes: DCN, BMP5, EYA1
Rationale: 40% FibroX+93.8% Uveal_Fibro from Sanes datasets; majorclass annotated by DCN

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual