Single Cell Atlas of Human Ocular Surface snRNA-seq: Cornea, Limbus, Sclera

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Cell Metadata

Smooth Muscle Cells

Ontology Term: smooth muscle cellCL:0000192
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: myocytes, smooth muscle, SMCs, smooth muscle fiber
Category Class of which the cell type is a subclass.: muscle cellCL:0000187
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CHRM3, MYH11, KALRN, CARMN, DGKI, GNG7, DGKG, SYNPO2, PLCB4, ATP2A2
Canonical Marker Genes: DES, ACTA2
Rationale: 100% Ciliary_Muscle from Sanes datasets; majorclass annotated by DES, ACTA2; need to decide whether keep it in this atlas

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual

Ontology Term: smooth muscle cellCL:0000192
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: myocytes, smooth muscle, SMCs, smooth muscle fiber
Category Class of which the cell type is a subclass.: muscle cellCL:0000187
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CHRM3, MYH11, KALRN, CARMN, DGKI, GNG7, DGKG, SYNPO2, PLCB4, ATP2A2
Canonical Marker Genes: DES, ACTA2
Rationale: 100% Ciliary_Muscle from Sanes datasets; majorclass annotated by DES, ACTA2; need to decide whether keep it in this atlas

Set of Labels Description: This atlas is an integrated collection of over 147k cells, derived from single-nuclei RNA-seq data of human ocular surface, including cornea, limbus, and anterior sclera. These cells have been categorized into 10 major cell classes and 26 types. This is the initial cell type label for the atlas annotation. These labels will be examined, refined, and updated during the annotation jamboree.
Annotation Method: manual