Lymphoid cells from human liver dataset

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Cell Metadata

CD4+ Th cells

Ontology Term: helper T cellCL:0000912
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: CD4+ Th cell
Category Class of which the cell type is a subclass.: effector T cellCL:0000911
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD4, CD40LG, DPP4, SLAMF1, IL7R, RCAN3, GPR183, LTB
Canonical Marker Genes: CD4
Rationale: Marker genes are DEGs for this population compared with rest of UMAP (from Table S5 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Ontology Term: helper T cellCL:0000912
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: CD4+ Th cell
Category Class of which the cell type is a subclass.: effector T cellCL:0000911
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: CD4, CD40LG, DPP4, SLAMF1, IL7R, RCAN3, GPR183, LTB
Canonical Marker Genes: CD4
Rationale: Marker genes are DEGs for this population compared with rest of UMAP (from Table S5 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual