Lymphoid cells from human liver dataset

Circulating NK

Ontology Term

natural killer cellCL:0000623

Synonyms

Terms that have the same, or nearly the same, meaning as the selected cell type.

circulating NK cell, NK cell

Category

Class of which the cell type is a subclass.

group 1 innate lymphoid cellCL:0001067

Ontology Assessment

Disagreements with any aspect of the Cell Ontology.

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Marker Gene Evidence

Gene markers used by researcher to assign this cell annotation.

IGFBP7, AKR1C3, CX3CR1, CHST2, FGFBP2, PRSS23, SH2D1B, FCGR3A, GNLY, CTBP2

Canonical Marker Genes

NCR1, KLRC1

Rationale

Marker genes are top 10 DEGs for this population compared with rest of UMAP (from Table S5 in publication).

Inherited from author_cell_type

Set of Labels Description

Annotation of cell types in dataset based on prior knowledge

Annotation Method

manual

• v1 Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
• Lymphoid cells from human liver dataset