Lymphoid cells from human liver dataset

Main

Cell Metadata

Naive/CM CD4+ T cells

Full Name: Naive CD4-positive T cell
Closest Ontology Term: naive T cellCL:0000898
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: CD4+ naive T cell
Category Class of which the cell type is a subclass.: mature T cellCL:0002419
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MRTFA, CCR7, LEF1, SELL, CD4, GPR183, LTB, RCAN3, RGCC, CD40LG
Canonical Marker Genes: CD4, SELL, CD3G
Rationale: Marker genes are top 10 DEGs for this population compared with rest of the UMAP (from Table S5 in publication)/

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Main

Cell Metadata

Full Name: Naive CD4-positive T cell
Closest Ontology Term: naive T cellCL:0000898
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: CD4+ naive T cell
Category Class of which the cell type is a subclass.: mature T cellCL:0002419
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: MRTFA, CCR7, LEF1, SELL, CD4, GPR183, LTB, RCAN3, RGCC, CD40LG
Canonical Marker Genes: CD4, SELL, CD3G
Rationale: Marker genes are top 10 DEGs for this population compared with rest of the UMAP (from Table S5 in publication)/

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual