Lymphoid cells from human liver dataset

Main

Cell Metadata

NKT

Ontology Term: mature NK T cellCL:0000814
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: NKT
Category Class of which the cell type is a subclass.: mature alpha-beta T cellCL:0000791
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FGFBP2, PRSS23, GNLY, CX3CR1, FCGR3A, ADGRG1, GZMB, C1orf21, CEP78, TTC38
Canonical Marker Genes: CD3E, FCGR3A, GZMB
Rationale: Marker genes are top 10 DEGs for this population compared with rest of the UMAP (from Table S5 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Ontology Term: mature NK T cellCL:0000814
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: NKT
Category Class of which the cell type is a subclass.: mature alpha-beta T cellCL:0000791
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: FGFBP2, PRSS23, GNLY, CX3CR1, FCGR3A, ADGRG1, GZMB, C1orf21, CEP78, TTC38
Canonical Marker Genes: CD3E, FCGR3A, GZMB
Rationale: Marker genes are top 10 DEGs for this population compared with rest of the UMAP (from Table S5 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual