Lymphoid cells from human liver dataset

Main

Cell Metadata

pDCs

Ontology Term: plasmacytoid dendritic cellCL:0000784
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: pDC
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SCT, LRRC26, LILRA4, PTCRA, CLEC4C, LAMP5, IL3RA, PLD4, MAP1A, PTPRS
Canonical Marker Genes: LILRA4
Rationale: Marker genes are top 10 DEGs for this population compared with rest of the UMAP (from Table S5 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual

Main

Cell Metadata

Ontology Term: plasmacytoid dendritic cellCL:0000784
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: pDC
Category Class of which the cell type is a subclass.: dendritic cellCL:0000451
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SCT, LRRC26, LILRA4, PTCRA, CLEC4C, LAMP5, IL3RA, PLD4, MAP1A, PTPRS
Canonical Marker Genes: LILRA4
Rationale: Marker genes are top 10 DEGs for this population compared with rest of the UMAP (from Table S5 in publication).

Set of Labels Description: Annotation of cell types in dataset based on prior knowledge
Annotation Method: manual