snRNA-seq of human optic nerve and optic nerve head - astrocytes

Main

Cell Metadata

Astro_retina_NLGN1+

Ontology Term: astrocyteCL:0000127
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: retina astrocyte glia that expresses NLGN1+
Category Class of which the cell type is a subclass.: macroglial cellCL:0000126
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AC007368.1, AC078923.1
Canonical Marker Genes: unknown
Rationale: An astrocyte sub class that are primarly found in retina and expresses NLGN1

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster with scanpy based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools

Ontology Term: astrocyteCL:0000127
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: retina astrocyte glia that expresses NLGN1+
Category Class of which the cell type is a subclass.: macroglial cellCL:0000126
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: AC007368.1, AC078923.1
Canonical Marker Genes: unknown
Rationale: An astrocyte sub class that are primarly found in retina and expresses NLGN1

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster with scanpy based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools