Cell Annotation
Platform

Unsupported Browser

You're currently using an outdated browser, and the site may not work properly as a result.

For the best experience, please update your browser or switch to the latest version of Google Chrome.

snRNA-seq of human optic nerve and optic nerve head - all cells

Main

Cell Metadata

Ontology Term: blood vessel smooth muscle cellCL:0019018
Synonyms Terms that have the same, or nearly the same, meaning as the selected cell type.: vascularSMC SLC7A2+, vascular associated smooth muscle cell SLC7A2+, vSMC SLC7A2+
Category Class of which the cell type is a subclass.: vascular associated smooth muscle cellCL:0000359
Ontology Assessment Disagreements with any aspect of the Cell Ontology.: —
Marker Gene Evidence Gene markers used by researcher to assign this cell annotation.: SLC7A2, ACTA2, TAGLN
Canonical Marker Genes: SLC7A2, ACTA2, TAGLN
Rationale: A vascular associated smooth muscle cell sub class that expresses ACTA2, TAGLN, and SLC7A2
Rationale DOI: https://doi.org/10.1073/pnas.2306153120

Set of Labels Description: We used scVI for data integration and then manually annotated each cell cluster based on marker gene expression
Annotation Method: both
Algorithm Name: scVI
Algorithm Version: scvi-tools 1.3.0
Algorithm URL: https://github.com/scverse/scvi-tools